@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15230: (2016-06-23 )
MEKVIQELKEREVGKVLANEPLANHTTMKIGGPADVLVIPSSVDAVKDIMDVIKKYDVKWTVIGRGSNLLVLDEGIRGVVIKLGAGLDHLELEGEQVTVGGGYSVVRLATSLSKKGLSGLEFAAGIPGSVGGAVYMNAGAHGSDMSEILVKAHILFEDGTIEWLTNEQMDFSYRTSVLQKKRPGVCLEAVLQLEQKDKESIVQQMQSNKDYRKNTQPYSSPCAGSIFRNPLPNHAGNLVEKAGLKGYQIGGAKISEMHGNFIVNAGGASAKDVLDLIDHVKKTIREKYEIDMHTEVEIIGGNR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(4PYT)
MURB_BACLD
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




FAD_A_2(4PYT)
MURB_BACLD
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




FAD_B_2(2GQU)
MURB_THET8
[Raw transfer]




FAD_A_2(3TX1)
MURB_LISMO
[Raw transfer]




FAD_A_2(3TX1)
MURB_LISMO
[Raw transfer]




FAD_A_3(2GQT)
MURB_THET8
[Raw transfer]




EPU_C_3(2GQU)
MURB_THET8
[Raw transfer]




EPU_C_3(1UXY)
?
[Raw transfer]




FAD_B_2(1HSK)
MURB_STAAU
[Raw transfer]




1 PsiBlast_PDB 95.7679%-120 - C3 -4PYT 14.1 MURB_BACLD
32 HHSearch 94.8578%-120 - C3 -4PYT 14.1 MURB_BACLD
21 Fugue 78.8335%-123 - C3 -1HSK 14.0 MURB_STAAU
3 PsiBlast_PDB 77.7836%-128 - C3 -1HSK 14.0 MURB_STAAU
35 HHSearch 76.8036%-122 - C3 -1HSK 14.0 MURB_STAAU
36 HHSearch 75.7638%-113 - C3 -3TX1 13.0 MURB_LISMO
2 PsiBlast_PDB 74.4938%-109 - C3 -3TX1 13.0 MURB_LISMO
30 HHSearch 70.7031%-127 - C3 -3I99 - MURB_VIBCH -
31 HHSearch 70.0428%-118 - C3 -1UXY - MURB_ECOLI -
6 PsiBlast_PDB 69.3427%-125 - C3 -3I99 - MURB_VIBCH -
33 HHSearch 67.2125%-110 - C3 -4JB1 - MURB_PSEAE -
34 HHSearch 65.9237%-101 - C3 -2GQT - MURB_THET8 -
5 PsiBlast_PDB 63.9038%-105 - C3 -2GQU 13.7 MURB_THET8
4 PsiBlast_PDB 62.6138%-103 - C3 -2GQT 13.6 MURB_THET8
7 PsiBlast_PDB 60.7527%-100 - C3 -2Q85 - MURB_ECOLI -
9 PsiBlast_PDB 59.6827%-102 - C3 -1MBT - MURB_ECOLI -
11 PsiBlast_PDB 59.6626% -99 - C3 -1UXY - MURB_ECOLI -
12 PsiBlast_PDB 59.6521% -89 - C3 -4JAY - MURB_PSEAE -
13 PsiBlast_PDB 59.5921% -87 - C3 -4JB1 - MURB_PSEAE -
10 PsiBlast_PDB 59.5627% -99 - C3 -2MBR - MURB_ECOLI -
23 Fugue 44.2636%-110 - C3 -1HSK 2.9 MURB_STAAU