@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15770: (2016-06-24 )
MLIGKRISGRYQILRVIGGGGMANVYLAEDIILDREVAIKILRFDYANDNEFIRRFRREAQSASSLDHPNIVSIYDLGEEDDIYYIVMEYVEGMTLKEYITANGPLHPKEALNIMEQIVSAIAHAHQNQIVHRDIKPHNILIDHMGNIKVTDFGIATALSSTTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGRIPFDGESAVSIALKHLQAETPSAKRWNPSVPQSVENIILKATAKDPFHRYETAEDMEADIKTAFDADRLNEKRFTIQEDEEMTKAIPIIKDEELAKAAGEKEAEVTTAQENKTKKNGKRKKWPWVLLTICLVFITAGILAVTVFPSLFMPKDVKIPDVSGMEYEKAAGLLEKEGLQVDSEVLEISDEKIEEGLMVKTDPKADTTVKEGATVTLYKSTGKAKTEIGDVTGQTVDQAKKALKDQGFNHVTVNEVNDEKNAGTVIDQNPSAGTELVPSEDQVKLTVSIGPEDITLRDLKTYSKEAASGYLEDNGLKLVEKEAYSDDVPEGQVVKQKPAAGTAVKPGNEVEVTFSLGPEKKPAKTVKEKVKIPYEPENEGDELQVQIAVDDADHSISDTYEEFKIKEPTERTIELKIEPGQKGYYQVMVNNKVVSYKTIEYPKDE

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_3(4GV1)
AKT1_HUMAN
[Raw transfer]




ACP_A_2(1O6Y)
PKNB_MYCTU
[Raw transfer]




AGS_A_2(3ORK)
?
[Raw transfer]




ADP_A_2(3F61)
PKNB_MYCTU
[Raw transfer]




AGS_A_2(3ORO)
?
[Raw transfer]




ANP_A_2(4BL1)
MELK_HUMAN
[Raw transfer]




AGS_A_2(3ORM)
?
[Raw transfer]




AGS_A_2(3ORT)
?
[Raw transfer]




AGS_A_2(3ORP)
?
[Raw transfer]




ANP_A_8(3Q5I)
?
[Raw transfer]




GOL_A_4(3HZT)
?
[Raw transfer]




GOL_A_12(3IGO)
?
[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




24R_A_3(5EAK)
?
[Raw transfer]




5RC_A_2(5ES1)
MARK4_HUMAN
[Raw transfer]




1WS_A_2(4BKZ)
MELK_HUMAN
[Raw transfer]




MIX_G_7(2FUM)
PKNB_MYCTU
[Raw transfer]




MIX_E_5(2FUM)
PKNB_MYCTU
[Raw transfer]




24R_B_4(5EAK)
?
[Raw transfer]




23 PsiBlast_CBE 86.4750%-111 - C1 -4EQM - ? -
24 PsiBlast_CBE 85.8350%-105 - C1 -4EQM - ? -
21 PsiBlast_CBE 85.1150%-109 - C1 -4EQM - ? -
22 PsiBlast_CBE 84.6550%-110 - C1 -4EQM - ? -
1 PsiBlast_PDB 84.6350%-104 - C1 -4EQM - ? -
25 PsiBlast_CBE 84.1350%-106 - C1 -4EQM - ? -
10 PsiBlast_PDB 82.5139%-100 - C1 -4OW8 - PKNA_MYCTU -
5 PsiBlast_PDB 80.8845%-106 - C1 -3ORK 2.8 ?
9 PsiBlast_PDB 80.5745%-105 - C1 -3F61 5.5 PKNB_MYCTU
7 PsiBlast_PDB 80.5745% -97 - C1 -3ORP 6.3 ?
85 HHSearch 79.2139%-102 - C1 -4X3F - PKNA_MYCTU -
2 PsiBlast_PDB 78.2945%-106 - C1 -1O6Y 5.7 PKNB_MYCTU
8 PsiBlast_PDB 77.9845%-100 - C1 -3ORT 4.8 ?
3 PsiBlast_PDB 76.2745% -97 - C1 -2FUM 4.5 PKNB_MYCTU
6 PsiBlast_PDB 74.6345% -95 - C1 -3ORO 7.2 ?
26 PsiBlast_CBE 74.1245%-111 - C1 -2FUM 5.0 PKNB_MYCTU
4 PsiBlast_PDB 71.8545%-100 - C1 -3ORM 5.8 ?
80 Fugue 70.6025%-110 - C1 -3H4J - SNF1_SCHPO -
86 HHSearch 66.7328%-101 - C1 -4CZU - CIPKN_ARATH -
91 HHSearch 66.6329%-128 - C1 -4ZHX - ? -
27 PsiBlast_CBE 60.4935%-111 - C1 -5EAK 5.9 ?
13 PsiBlast_PDB 60.2935%-116 - C1 -5ES1 9.3 MARK4_HUMAN
52 PsiBlast_CBE 57.6531%-138 - C1 -4BKZ 5.9 MELK_HUMAN
61 PsiBlast_CBE 56.8932%-123 - C1 -3IGO 2.3 ?
53 PsiBlast_CBE 56.5731%-138 - C1 -4BKY 8.1 MELK_HUMAN
15 PsiBlast_PDB 56.4235%-105 - C1 -5EAK 4.9 ?
74 PsiBlast_CBE 53.2031%-125 - C1 -3HZT 2.3 ?
33 PsiBlast_CBE 51.8334%-122 - C1 -3Q5I 4.0 ?
51 PsiBlast_CBE 51.2831%-129 - C1 -4BL1 6.4 MELK_HUMAN