@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15780: (2016-06-24 )
MPEGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRKPRY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_7(1U0L)
RSGA_THEMA
[Raw transfer]




GDP_A_7(1U0L)
RSGA_THEMA
[Raw transfer]




GDP_A_4(2RCN)
RSGA_SALTY
[Raw transfer]




GDP_A_4(2RCN)
RSGA_SALTY
[Raw transfer]




GDP_B_8(1U0L)
RSGA_THEMA
[Raw transfer]




GDP_C_9(1U0L)
RSGA_THEMA
[Raw transfer]




GDP_A_4(2YV5)
RSGA_AQUAE
[Raw transfer]




GDP_A_4(2YV5)
RSGA_AQUAE
[Raw transfer]




1 PsiBlast_PDB 90.45100%-124 - C3 -1T9H - RSGA_BACSU -
48 HHSearch 90.0299%-124 - C3 -1T9H - RSGA_BACSU -
51 HHSearch 70.9140%-123 - C3 -1U0L 7.0 RSGA_THEMA
49 HHSearch 68.7634%-119 - C3 -2YV5 7.1 RSGA_AQUAE
22 PsiBlast_CBE 68.7540%-112 - C3 -1U0L 6.2 RSGA_THEMA
50 HHSearch 68.0135%-146 - C3 -2RCN 6.5 RSGA_SALTY
2 PsiBlast_PDB 67.9040%-114 - C3 -1U0L 7.0 RSGA_THEMA
38 Fugue 67.2637%-110 - C3 -1U0L - RSGA_THEMA -
21 PsiBlast_CBE 66.7740%-111 - C3 -1U0L 6.7 RSGA_THEMA
3 PsiBlast_PDB 65.6037%-152 - C3 -2RCN 6.5 RSGA_SALTY
4 PsiBlast_PDB 64.5236%-121 - C3 -2YV5 7.1 RSGA_AQUAE
5 PsiBlast_PDB 58.7835%-143 - C3 -4A2I - RSGA_ECOLI -
53 HHSearch 45.5321%-124 - C3 -3H2Y - ? -
63 HHSearch 44.1914%-213 - C3 -5DN8 - DER_COXBU -
61 HHSearch 42.9113%-192 * C3 *3CLV - ? -
55 HHSearch 42.4420%-138 - C3 -3EC1 - ? -
66 HHSearch 42.4011%-192 - C3 -3IEV - ERA_AQUAE -
64 HHSearch 41.8716%-146 - C3 -1R8S - ARF1_BOVIN -
52 HHSearch 40.8120%-111 - C3 -1PUJ - RBGA_BACSU -
71 HHSearch 40.5817%-142 - C3 -4M8N - RAP1B_HUMAN -