@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu16120: (2016-06-25 )
MSDYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDIEQNFEPKYITIRGKGPVLKELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLNSDCRVVFNEITKDAIKESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDREKEINDFKPEEYWTIDGTFLKGQETFEASFFGKNGKKLPLNSEADVKEILSQLKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGREGTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLGGKRKPAKKNENAQDAHEAIRPTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTNNGLTFRANGSKVKFSGFMKVYVEGKDDQMEEKDRMLPDLQEGDTVLSKDIEPEQHFTQPPPRYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEFFPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAESEMKEVEIEPEYAGEDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSKKKRVFYGCDRYPDCEFVSWDKPIERKCPKCGKMLVEKKLKKGIQVQCVECDYKEEPQK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_B_2(3PX7)
TOP1_ECOLI
[Raw transfer]
-
24 HHSearch 80.5143% -70 - C4 -4RUL - TOP1_ECOLI -
1 PsiBlast_PDB 79.3640% -69 - C4 -4RUL - TOP1_ECOLI -
4 PsiBlast_PDB 75.3144% -82 - C4 -1CY6 3.0 TOP1_ECOLI
28 HHSearch 74.8947% -77 - C4 -1MW9 - TOP1_ECOLI -
12 PsiBlast_PDB 74.8444% -87 - C4 -3PX7 15.0 TOP1_ECOLI
10 PsiBlast_PDB 74.6144% -74 - C4 -1MW8 11.1 TOP1_ECOLI
25 HHSearch 74.2843% -52 - C4 -5D5H - TOP1_MYCTU -
11 PsiBlast_PDB 74.0044% -73 - C4 -1MW9 - TOP1_ECOLI -
7 PsiBlast_PDB 73.9844% -80 - C4 -1CY4 2.4 TOP1_ECOLI
5 PsiBlast_PDB 73.8944% -76 - C4 -1CY8 2.4 TOP1_ECOLI
8 PsiBlast_PDB 73.8144% -77 - C4 -3PWT - TOP1_ECOLI -
2 PsiBlast_PDB 73.4444% -77 - C4 -1CY1 3.7 TOP1_ECOLI
9 PsiBlast_PDB 73.1744% -75 - C4 -1ECL - TOP1_ECOLI -
3 PsiBlast_PDB 72.8644% -75 - C4 -1CY2 2.0 TOP1_ECOLI
15 PsiBlast_PDB 72.3941% -58 - C4 -5D5H - TOP1_MYCTU -
14 PsiBlast_PDB 71.7942% -77 - C4 -2GAJ - TOP1_THEMA -
6 PsiBlast_PDB 71.5844% -75 - C4 -1CY0 - TOP1_ECOLI -
26 HHSearch 69.1542% -72 - C- -2GAI - TOP1_THEMA -
13 PsiBlast_PDB 69.1242% -78 - C- -2GAI - TOP1_THEMA -
47 Fugue 68.8342% -70 - C- -2GAI - TOP1_THEMA -