@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu16510: (2016-06-26 )
MEKPKYKRIVLKLSGEALAGEQGNGINPTVIQSIAKQVKEIAELEVEVAVVVGGGNLWRGKTGSDLGMDRATADYMGMLATVMNSLALQDSLETLGIQSRVQTSIEMRQVAEPYIRRKAIRHLEKKRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMAKNNVDGVYNADPRKDESAVKYESLSYLDVLKDGLEVMDSTASSLCMDNDIPLIVFSIMEEGNIKRAVIGESIGTIVRGK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]



UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]



UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]



GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]



GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]
25 PsiBlast_CBE 89.0453%-144 - C1 -3EK5 - PYRH_XANCP -
26 PsiBlast_CBE 87.5253%-144 - C1 -3EK5 - PYRH_XANCP -
27 PsiBlast_CBE 87.2553%-143 - C1 -3EK5 - PYRH_XANCP -
28 PsiBlast_CBE 85.3353%-139 - C1 -3EK5 - PYRH_XANCP -
3 PsiBlast_PDB 84.9053%-146 - C1 -3EK5 - PYRH_XANCP -
1 PsiBlast_PDB 84.7260%-143 - C1 -1Z9D - PYRH_STRP1 -
24 PsiBlast_CBE 84.6653%-146 - C1 -3EK5 - PYRH_XANCP -
4 PsiBlast_PDB 84.2353%-144 - C1 -3EK6 - PYRH_XANCP -
5 PsiBlast_PDB 83.3548%-145 - C1 -2BND 7.7 PYRH_ECOLI
33 PsiBlast_CBE 83.2648%-150 - C1 -2V4Y - PYRH_ECOLI -
34 PsiBlast_CBE 82.9248%-154 - C1 -2V4Y - PYRH_ECOLI -
31 PsiBlast_CBE 82.9148%-149 - C1 -2V4Y - PYRH_ECOLI -
7 PsiBlast_PDB 82.5548%-150 - C1 -2V4Y - PYRH_ECOLI -
62 HHSearch 82.4361%-145 - C1 -1Z9D - PYRH_STRP1 -
59 HHSearch 81.7853%-140 - C1 -3EK6 - PYRH_XANCP -
22 PsiBlast_CBE 81.2857%-171 - C1 -3NWY - PYRH_MYCTU -
6 PsiBlast_PDB 79.6748%-145 - C1 -2BNE 5.8 PYRH_ECOLI
32 PsiBlast_CBE 79.4748%-155 - C1 -2V4Y - PYRH_ECOLI -
10 PsiBlast_PDB 79.2645%-145 - C1 -2BNF 7.9 PYRH_ECOLI
9 PsiBlast_PDB 79.1751%-144 - C1 -1YBD 2.9 PYRH_NEIMB
50 Fugue 78.5547%-140 - C1 -2BNE 5.8 PYRH_ECOLI
58 HHSearch 78.4853%-138 * C1 *1YBD 2.9 PYRH_NEIMB
29 PsiBlast_CBE 76.2848%-138 - C1 -2BND 7.5 PYRH_ECOLI
35 PsiBlast_CBE 75.9148%-136 - C1 -2BNE 5.9 PYRH_ECOLI
40 PsiBlast_CBE 75.1951%-151 - C1 -4A7W 2.6 PYRH_HELPY
11 PsiBlast_PDB 74.5351%-146 - C1 -4A7W 3.2 PYRH_HELPY
61 HHSearch 71.0149%-136 - C1 -4A7W 3.2 PYRH_HELPY