@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu16780: (2016-06-26 )
MKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLGIDVVIPDISYLIERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLTLALLREKLKQYGHNRKTDLREIHSKSVITFESTKVSFFRTIHSIPDSVGVSFKTSLGSIVCTGDFKFDQTPALNQTCDIGEIAKIGNSGVLALLSDSANAERPGYTPSEAAVSGEISDALYNSQNRVIIAVFASNINRIQQVIHAAAQNGRKIAVAGKNLQSVLQLARKLGYIEADDELFISVQDVKKYPKREVAIITAGSQGEPLAALTRMANKAHKQLNIEEGDTVVIASTPIPGQELIYSKTVDLLARAGAQVIFAQKRVHVSGHGSQEELKLMINLLKPKYLIPVNGEYRMQKAHSKIAEETGMKRSDIFLIEKGDVVEFRGQNVKIGDKVPYGNILIDGLGVGDIGNIVLRDRRLLSQDGILIVVITLDKQKKHLVSGPEIITRGFVYVRESEGLIVQATELVRSIVTEATETSNVEWSTLKQAMRDALNQFLYEKTKRKPMIIPIIMEV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_8(4XWT)
?
[Raw transfer]



U5P_B_12(4XWT)
?
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



C5P_B_9(5A0V)
?
[Raw transfer]



NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0V)
?
[Raw transfer]
-
NACID_D_3(4XWW)
?
[Raw transfer]
-
NACID_D_3(4XWW)
?
[Raw transfer]
-
NACID_E_4(4XWW)
?
[Raw transfer]
-
CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]
-
NACID_F_4(5A0V)
?
[Raw transfer]
-
CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]
-
28 HHSearch 89.9249%-124 - C2 -3ZQ4 - RNJ1_BACSU -
1 PsiBlast_PDB 88.8648%-123 - C2 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 87.2948%-126 - C2 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 87.0448%-124 - C2 -3ZQ4 - RNJ1_BACSU -
22 PsiBlast_CBE 86.6048%-126 - C2 -3ZQ4 - RNJ1_BACSU -
30 HHSearch 82.4938%-118 - C2 -3BK2 4.5 RNJ_THET2
7 PsiBlast_PDB 81.6839%-113 - C2 -3BK2 4.5 RNJ_THET2
6 PsiBlast_PDB 80.9639%-112 - C2 -3BK1 - RNJ_THET2 -
26 PsiBlast_CBE 80.5337%-116 - C2 -4XWW 8.9 ?
4 PsiBlast_PDB 80.1139%-117 - C2 -3T3N 7.0 RNJ_THET2
5 PsiBlast_PDB 79.7539%-117 - C2 -3T3O 9.1 RNJ_THET2
27 PsiBlast_CBE 79.6037%-113 - C2 -4XWT 3.3 ?
8 PsiBlast_PDB 78.9637%-115 - C2 -4XWT 4.0 ?
31 HHSearch 78.0637%-110 - C2 -4XWW 6.8 ?
9 PsiBlast_PDB 77.5537%-110 - C2 -4XWW 6.8 ?
25 PsiBlast_CBE 74.6538%-121 - C2 -5A0T 9.6 ?
29 HHSearch 73.7537%-119 * C2 *5A0T 10.4 ?
24 PsiBlast_CBE 73.6438%-118 - C2 -5A0V 8.4 ?
3 PsiBlast_PDB 72.8738%-118 - C2 -5A0V 9.4 ?
2 PsiBlast_PDB 72.6338%-120 - C2 -5A0T 9.9 ?