@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu16990: (2016-06-27 )
MQSGKMKALMKKDGAFGAVLTEVPIPEIDKHEVLIKVKAASICGTDVHIYNWDQWARQRIKTPYVFGHEFSGIVEGVGENVSSVKVGEYVSAETHIVCGECVPCLTGKSHVCTNTAIIGVDTAGCFAEYVKVPADNIWRNPADMDPSIASIQEPLGNAVHTVLESQPAGGTTAVIGCGPIGLMAVAVAKAAGASQVIAIDKNEYRLRLAKQMGATCTVSIEKEDPLKIVSALTSGEGADLVCEMSGHPSAIAQGLAMAANGGRFHILSLPEHPVTIDLTNKVVFKGLTIQGITGRKMFSTWRQVSQLISSNMIDLAPVITHQFPLEEFEKGFELMRSGQCGKVILIP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_7(2D8A)
TDH_PYRHO
[Raw transfer]




MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]




23 PsiBlast_CBE 91.9850%-117 - C1 -3GFB - TDH_THEKO -
21 PsiBlast_CBE 91.1850%-119 - C1 -3GFB - TDH_THEKO -
1 PsiBlast_PDB 90.3750%-113 - C1 -3GFB - TDH_THEKO -
3 PsiBlast_PDB 90.3148%-119 - C1 -2DFV - TDH_PYRHO -
22 PsiBlast_CBE 87.6150%-113 - C1 -3GFB - TDH_THEKO -
87 HHSearch 85.8149%-119 - C1 -2D8A 9.1 TDH_PYRHO
2 PsiBlast_PDB 84.5548%-119 - C1 -2D8A - TDH_PYRHO -
101 HHSearch 80.9947%-111 - C1 -2DQ4 2.2 TDH_THET8
24 PsiBlast_CBE 77.9847%-109 - C1 -2EJV - TDH_THET8 -
25 PsiBlast_CBE 76.9947%-109 - C1 -2DQ4 - TDH_THET8 -
5 PsiBlast_PDB 76.7147%-108 - C1 -2EJV - TDH_THET8 -
4 PsiBlast_PDB 75.8447%-108 - C1 -2DQ4 - TDH_THET8 -
11 PsiBlast_PDB 72.1430%-123 - C1 -1E3J - ? -
102 HHSearch 69.4729%-112 - C1 -4UEJ - GATD_ECOLI -
95 HHSearch 69.4630%-122 - C1 -4EJ6 - ? -
19 PsiBlast_PDB 65.4829%-116 - C1 -4UEJ - GATD_ECOLI -
20 PsiBlast_PDB 64.6629%-117 - C1 -4UEK - GATD_ECOLI -
16 PsiBlast_PDB 64.3031%-110 - C1 -3IP1 - ? -
7 PsiBlast_PDB 64.0229%-115 - C1 -1VJ0 - ? -
14 PsiBlast_PDB 63.5529%-120 - C1 -1PL6 - DHSO_HUMAN -