@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu17330: (2016-06-27 )
MNNTKQPVVILVGPTAVGKTNLSIQLAKSLNAEIISGDSMQIYKGMDIGTAKITEQEMEGVPHHLIDILDPQDSFSTADYQSLVRNKISEIANRGKLPMIVGGTGLYIQSVLYDYTFTEEANDPVFRESMQMAAEREGADFLHAKLAAADPEAAAAIHPNNTRRVIRALEILHTSGKTMSQHLKEQKRELLYNAVLIGLTMDRDTLYERINQRVDLMMQSGLLPEVKRLYDKNVRDCQSIQAIGYKELYAYFDGFVTLSDAVEQLKQNSRRYAKRQLTWFRNKMQVTWFDMTPPVDMELKKKEIFTHIAGKLEL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DPO_A_3(3CRQ)
MIAA_PSEAE
[Raw transfer]




PPV_B_20(3EPK)
MOD5_YEAST
[Raw transfer]




DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]




PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]




PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]




PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]




PPV_B_17(3EPH)
MOD5_YEAST
[Raw transfer]




DST_A_5(2ZXU)
MIAA_ECOLI
[Raw transfer]




DST_B_6(2ZXU)
MIAA_ECOLI
[Raw transfer]




DMA_B_10(3EPL)
MOD5_YEAST
[Raw transfer]




DMA_A_6(3EPL)
MOD5_YEAST
[Raw transfer]




DST_A_9(3EPK)
MOD5_YEAST
[Raw transfer]




2 PsiBlast_PDB 86.7257%-134 - C2 -3EXA - MIAA_BACHD -
109 HHSearch 85.9758%-134 - C2 -3EXA - MIAA_BACHD -
1 PsiBlast_PDB 79.5157%-129 - C2 -2QGN - MIAA_BACHD -
3 PsiBlast_PDB 77.4048%-116 - C2 -3D3Q - MIAA_STAES -
108 HHSearch 77.0149%-110 - C2 -3D3Q - MIAA_STAES -
98 Fugue 75.7732%-125 - C2 -3EPH 3.9 MOD5_YEAST
5 PsiBlast_PDB 75.7437%-119 - C2 -2ZXU 4.7 MIAA_ECOLI
6 PsiBlast_PDB 75.3336%-121 - C2 -2ZM5 - MIAA_ECOLI -
4 PsiBlast_PDB 75.3037%-120 - C2 -3FOZ - MIAA_ECOLI -
112 HHSearch 73.6937%-114 - C2 -3FOZ - MIAA_ECOLI -
21 PsiBlast_CBE 72.9637%-120 - C2 -3FOZ - MIAA_ECOLI -
22 PsiBlast_CBE 72.0737%-115 - C2 -2ZXU 3.4 MIAA_ECOLI
110 HHSearch 71.8536%-124 - C2 -3EPH 3.9 MOD5_YEAST
26 PsiBlast_CBE 70.5535%-129 - C2 -3EPH 2.6 MOD5_YEAST
10 PsiBlast_PDB 70.1935%-131 - C2 -3EPH 3.9 MOD5_YEAST
25 PsiBlast_CBE 69.5235%-127 - C2 -3EPJ - MOD5_YEAST -
12 PsiBlast_PDB 69.3535%-125 - C2 -3EPK 4.1 MOD5_YEAST
24 PsiBlast_CBE 69.2035%-126 - C2 -3EPK 2.8 MOD5_YEAST
11 PsiBlast_PDB 69.1435%-127 - C2 -3EPJ - MOD5_YEAST -
111 HHSearch 68.0438%-136 - C2 -3CRM - MIAA_PSEAE -
8 PsiBlast_PDB 66.7137%-142 - C2 -3CRQ 3.4 MIAA_PSEAE
9 PsiBlast_PDB 66.0637%-141 - C2 -3CRR 4.2 MIAA_PSEAE
23 PsiBlast_CBE 65.3935%-114 - C2 -3EPL 3.6 MOD5_YEAST
13 PsiBlast_PDB 63.8235%-110 - C2 -3EPL 2.4 MOD5_YEAST