@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu17350: (2016-06-27 )
MFESEAELRRIRIALVWIAVFLLFGACGNQDTIIETDNGNSDYETPQPTSFPLEHNHFGVMEDGYIKIYEYNESRNEVKLKKEYADDELE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACY_B_8(3KVP)
YMZC_BACSU
[Raw transfer]




ACY_B_8(3KVP)
YMZC_BACSU
[Raw transfer]




23 HHSearch 68.95100% -15 - C8 -3KVP - YMZC_BACSU -
13 Fugue 68.90100% 1 - C8 -3KVP - YMZC_BACSU -
1 PsiBlast_PDB 68.5498% -15 - C8 -3KVP - YMZC_BACSU -
12 PsiBlast_CBE 67.1198% -18 - C8 -3KVP 3.2 YMZC_BACSU
10 PsiBlast_CBE 64.6498% -8 - C8 -3KVP 3.1 YMZC_BACSU
11 PsiBlast_CBE 62.5398% -13 - C8 -3KVP - YMZC_BACSU -
19 Fugue 58.5222% -52 - C8 -3NO2 - ? -
15 Fugue 44.0317%-116 - C8 -2JO6 - NIRD_ECOLI -
40 HHSearch 42.5422%-328 * C9 *4XTR - ? -
4 PsiBlast_PDB 40.7442% 9 - C11 -2KX9 - PT1_ECOLI -
3 PsiBlast_PDB 40.3342% 9 * C11 *2L5H - PT1_ECOLI -
5 PsiBlast_PDB 40.2442% 9 - C11 -2XDF - PT1_ECOLI -
6 PsiBlast_PDB 39.9642% 9 - C11 -2N5T - PT1_ECOLI -
16 Fugue 37.6214% -26 - C8 -4QBO - ? -
8 PsiBlast_PDB 36.2328% 24 * C10 *2QQI - NRP1_HUMAN -
43 HHSearch 35.9614%-105 - C8 -4IEF - CPG2_PORGI -
9 PsiBlast_PDB 35.4728% 33 - C10 -2QQM - NRP1_HUMAN -
47 HHSearch 34.7621% -62 - C4 -1YHP - CAD1_DICDI -
51 HHSearch 34.6914%-103 * C8 *3SCY - ? -
2 PsiBlast_PDB 34.2639% -87 - C7 -5HZL - ? -