@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu18090: (2016-06-28 )
MARKQQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKKTGTLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKGLKIELIDERNDQREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEEMGDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENENLSVAEEV

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DOO_A_2(4K4O)
GYRB_ENTFA
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




EVO_A_3(5CPH)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCS2
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




1 PsiBlast_PDB 79.0571% 19 - C4 -4JUO - PARE_STRPN -
35 PsiBlast_CBE 62.4546% -17 - C3 -3ZKD - GYRB_MYCTU -
37 PsiBlast_CBE 61.8946% -21 - C3 -3ZKD - GYRB_MYCTU -
40 PsiBlast_CBE 61.5446% -9 - C3 -3ZKD - GYRB_MYCTU -
126 HHSearch 60.7251% -7 - C3 -3ZKB - GYRB_MYCTU -
39 PsiBlast_CBE 60.5446% -16 - C3 -3ZKD - GYRB_MYCTU -
52 PsiBlast_CBE 60.3946% 5 - C3 -3ZKB - GYRB_MYCTU -
54 PsiBlast_CBE 60.3146% -6 - C3 -3ZKB - GYRB_MYCTU -
25 PsiBlast_CBE 59.9177%-107 - C4 -3RAE - -
15 PsiBlast_PDB 59.3846% -3 - C3 -3ZKD - GYRB_MYCTU -
123 HHSearch 58.7279%-103 - C4 -3K9F - PARE_STRPN -
24 PsiBlast_CBE 58.5977%-104 - C4 -3RAF - -
10 PsiBlast_PDB 58.5577%-107 - C4 -3RAE - PARE_STRPN -
4 PsiBlast_PDB 58.4677%-103 - C4 -3K9F - PARE_STRPN -
41 PsiBlast_CBE 58.4146% -5 - C3 -3ZKD - GYRB_MYCTU -
30 PsiBlast_CBE 58.2677%-103 - C4 -3K9F - -
21 PsiBlast_CBE 58.2677%-108 - C4 -4KPF - -
34 PsiBlast_CBE 58.2246% -24 - C3 -3ZM7 - GYRB_MYCTU -
23 PsiBlast_CBE 58.1777%-101 - C4 -4KOE - -
36 PsiBlast_CBE 58.0446% 16 - C3 -3ZKD - GYRB_MYCTU -
130 HHSearch 57.4251% 18 - C3 -4WUB 10.2 GYRB_ECOLI
111 Fugue 57.4250% 20 - C3 -1EI1 8.1 GYRB_ECOLI
112 Fugue 56.3350% 33 - C3 -1EI1 8.1 GYRB_ECOLI
129 HHSearch 55.6048% 22 - C3 -1KIJ 6.4 GYRB_THET8
66 PsiBlast_CBE 55.1946% 19 - C3 -1KIJ 7.4 GYRB_THET8
67 PsiBlast_CBE 54.3146% 19 - C3 -1KIJ 6.4 GYRB_THET8
59 PsiBlast_CBE 53.3450% 10 - C3 -4ZVI 4.9 GYRB_ECOLI
81 PsiBlast_CBE 50.9139% 28 - C3 -1S16 10.1 PARE_ECOLI
82 PsiBlast_CBE 50.8339% 30 - C3 -1S16 9.7 PARE_ECOLI
132 HHSearch 50.5938% 24 - C3 -1S16 9.7 PARE_ECOLI
63 PsiBlast_CBE 50.2570% -34 - C3 -4MB9 4.9 ?
64 PsiBlast_CBE 49.2170% -31 - C3 -4LPB 6.3 ?
65 PsiBlast_CBE 48.6070% -32 - C3 -4EM7 5.2 ?
60 PsiBlast_CBE 48.2770% -31 - C3 -5BOD 5.4 ?
61 PsiBlast_CBE 47.6170% -31 - C3 -4MOT 5.7 ?
62 PsiBlast_CBE 47.5570% -30 - C3 -4MBC 5.2 ?
88 PsiBlast_CBE 46.3657% -44 - C3 -4BAE 7.5 GYRB_MYCS2
68 PsiBlast_CBE 46.0071% -22 - C3 -4URN 4.8 ?
70 PsiBlast_CBE 45.8571% -30 - C3 -4URN 4.7 ?
69 PsiBlast_CBE 43.9071% -12 - C3 -4URN 4.9 ?
90 PsiBlast_CBE 43.4254% -1 - C3 -4DUH 6.2 GYRB_ECOLI
141 HHSearch 43.2455% -2 - C3 -4DUH 6.2 GYRB_ECOLI
144 HHSearch 41.4151% -26 - C3 -5CPH 3.7 ?
89 PsiBlast_CBE 41.0154% -11 - C3 -4DUH 6.7 GYRB_ECOLI
143 HHSearch 39.4658% -18 * C3 *4K4O 7.3 GYRB_ENTFA
145 HHSearch 39.4148% 12 - C3 -3FV5 5.7 PARE_ECOLI
140 HHSearch 35.3758% 8 - C3 -4URO 6.1 GYRB_STAAU
116 Fugue 34.4352% 37 - C3 -1EI1 7.4 GYRB_ECOLI