@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu18260: (2016-06-29 )
MNFELTKEQQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQTFKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGEKCWITNASYARTVIVTAVTGKNKDGKNIISALIVPTDTPGLTITSPYDKMGVRGSNTAEILLEDVRVPAANLLGDPTKGFKQFLYTLDGGRISIAALAVGIAQAALDASLAYAKERKQFGQPISSFQAIQFKLADMAMEIDLARQMVLKAAWLKDHNRPFTKEAAYAKLFASEMATRACNQAIQIHGGSGYMKEYGVERMLRDAKLMEIGEGTSEIQRLVIARQLLK

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CAA_B_7(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_3(2D29)
?
[Raw transfer]




FDA_A_3(4N5F)
?
[Raw transfer]




FAD_B_4(2D29)
?
[Raw transfer]




FAD_C_3(2DVL)
?
[Raw transfer]




FAD_A_3(3NF4)
?
[Raw transfer]




COS_A_4(4L1F)
?
[Raw transfer]




FAD_A_3(3NF4)
?
[Raw transfer]




CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]




COS_B_9(4L1F)
?
[Raw transfer]




COS_A_4(4L1F)
?
[Raw transfer]




FAD_B_5(1UKW)
?
[Raw transfer]




FAD_B_11(3MDE)
ACADM_PIG
[Raw transfer]




FAD_D_4(2DVL)
?
[Raw transfer]




FAD_A_9(3MDE)
ACADM_PIG
[Raw transfer]




FAD_A_4(1UKW)
?
[Raw transfer]




FAD_B_7(3MDD)
ACADM_PIG
[Raw transfer]




FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]




FAD_A_5(3MDD)
ACADM_PIG
[Raw transfer]




CAA_G_7(1JQI)
ACADS_RAT
[Raw transfer]




CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_4(1UKW)
?
[Raw transfer]




FDA_B_15(4N5F)
?
[Raw transfer]




115 HHSearch 93.0650% -71 - C1 -4L1F 5.9 ?
3 PsiBlast_PDB 92.1449% -70 - C1 -4L1F 5.9 ?
29 PsiBlast_CBE 91.7749% -72 - C1 -4L1F 7.1 ?
116 HHSearch 89.8448% -83 - C1 -4U83 - ? -
25 PsiBlast_CBE 88.8650% -76 - C1 -2VIG - ACADS_HUMAN -
27 PsiBlast_CBE 88.8350% -79 - C1 -2VIG - ACADS_HUMAN -
4 PsiBlast_PDB 88.7648% -83 - C1 -4U83 - ? -
2 PsiBlast_PDB 88.5550% -77 - C1 -2VIG - ACADS_HUMAN -
22 PsiBlast_CBE 88.2550% -72 - C1 -2VIG - ACADS_HUMAN -
32 PsiBlast_CBE 88.1248% -81 - C1 -4U83 - ? -
31 PsiBlast_CBE 87.9548% -80 - C1 -4U83 - ? -
21 PsiBlast_CBE 87.8349% -71 - C1 -1JQI 5.4 ACADS_RAT
119 HHSearch 87.4946% -72 - C1 -1UKW 9.1 ?
24 PsiBlast_CBE 87.2650% -78 - C1 -2VIG - ACADS_HUMAN -
1 PsiBlast_PDB 87.1449% -69 - C1 -1JQI - ACADS_RAT -
26 PsiBlast_CBE 86.9050% -76 - C1 -2VIG - ACADS_HUMAN -
23 PsiBlast_CBE 86.8650% -77 - C1 -2VIG - ACADS_HUMAN -
7 PsiBlast_PDB 86.8445% -73 - C1 -1UKW 9.1 ?
5 PsiBlast_PDB 86.7047% -83 - C1 -4N5F 9.3 ?
35 PsiBlast_CBE 86.6145% -73 - C1 -1UKW 8.6 ?
47 PsiBlast_CBE 84.7346% -79 - C1 -2DVL 9.1 ?
33 PsiBlast_CBE 83.5347% -88 - C1 -4N5F 7.3 ?
14 PsiBlast_PDB 83.4746% -79 - C1 -2DVL 8.7 ?
13 PsiBlast_PDB 78.4647% -27 - C1 -2D29 8.8 ?
44 PsiBlast_CBE 78.3547% -29 - C1 -2D29 7.9 ?
123 Fugue 77.4748% -4 - C1 -1BUC 3.4 ACDS_MEGEL
34 PsiBlast_CBE 76.5348% 4 - C1 -1BUC 4.8 ACDS_MEGEL
6 PsiBlast_PDB 76.4548% -1 - C1 -1BUC 4.7 ACDS_MEGEL
104 HHSearch 75.7239% -82 - C1 -3NF4 7.9 ?
52 PsiBlast_CBE 75.3541% -13 - C1 -3MDD 6.7 ACADM_PIG
51 PsiBlast_CBE 75.3541% -14 - C1 -3MDE 7.8 ACADM_PIG
16 PsiBlast_PDB 74.2441% -14 - C1 -3MDD 6.6 ACADM_PIG
85 PsiBlast_CBE 74.0638% -80 - C1 -3NF4 7.9 ?
17 PsiBlast_PDB 73.8141% -14 - C1 -3MDE 6.3 ACADM_PIG
110 HHSearch 68.0330% -31 - C1 -1SIQ 5.7 GCDH_HUMAN