@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu18300: (2016-06-29 )
MKKGADTMNTIKKIKNIYPLSHMQEGMLFHSFLRKEEGAYVEQSLFTIKGSLSYDWFQRSIQAIIDRHDIFRTVFLPHVPHLSGPRQVVMTEREFHLNSEDISHLPTNDQNEYIERFKEKDKQKGFDLQKDMLMRISLFKTAKDEHVCIWSHHHILMDGWCLGIVMQEFMQIYQSIHAGKPLSLDPVRPYSTYISWLTNRDKEKAAAYWDTYLKNYSAPSPLPRVSDKETKESYHREDLIFSLNKPLTDKLKETAKQHGVTLATLIQAVWGVMLQQYNRTDDVVFGAVVSGRPSEIPGVEQMIGLFINTIPIRIKTHQDETFHELLIRCQKEMLEAEPFTCQPLFDIQANTALKQELIDHIIVFENYPLQQKIADSADQTDSPLQIDQVQVSEQSGYNFNLVVAPGEELVIKFSYNAFVYDAAWISCIKRQFTQALSTAAQHPHMPIADFSFLDATEKEQIVTQFNNTKTEYPKNHTIIDLFREQAEKTPDHTALVYGNMSISYKELDKRSNALARELIQKGFRKNETAGILAAHSPEFMISVLAVLKAGGAYLPLDAELPPERVSFMLEETQAKMLIVQKGLEQNAAFSGTCIISDAQGLMEENDIPINISSSPDDLAYIMYTSGSTGRPKGVMITNRNVVSLVRNSNYTSASGDDRFIMTGSISFDAVTFEMFGALLNGASLHIIDKSTMLTPDRFGAYLLENDITVLFLTTALFNQLAQVRADMFRGLHTLYVGGEALSPALMNAVRHACPDLALHNIYGPTENTTFSTFFEMKRDYAGPIPIGKPISNSTAYILDTKGRLLPIGVPGELCVGGDGVAKGYLNRVDLTNAVFSPHPFLPGERIYRTGDLARWLPDGNLEYISRIDRQMKIRGKRIEPAEIEARLLEMEGVQEAAVTLREKDGEAQLYTHYVGDHKKTDTDFRADLARVLPDYMIPQHWVRVERMPLTGNGKIDRSALPIPENKPAKRQNIILPRNLVEEELANIWKQVLGVNTISIDDDFFAIGGHSLRALQVIHTLKHQQNIDIPIDFLFEHPTIAQLAEKLYSKQLTAANEQHVIKLNQHGAQNLFCFPPISGFGIYFKDLALLLNEKAAVYGFHFIEQDTRIEQYVNCMTDIQPEGPYVLLGYSAGGNLAFEVAQAMERKGLEVSDFIIVDAYLKEQPLPIDTGNDESAAYLPEAVREKVMKKKRNYQEYWAQLLNEGHIKASIHFIEAGIHPETSGHTGLTKWEGACGNYSEYTGFGAHKDMLEGTYAEKNADIILDILEKITSNQVILHKR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4D4I)
?
[Raw transfer]




AMP_B_10(1AMU)
GRSA_ANEMI
[Raw transfer]




AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]




AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]




AMP_A_2(3VNS)
?
[Raw transfer]




AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]




AMP_A_6(4D56)
?
[Raw transfer]




ANP_A_2(4D4G)
?
[Raw transfer]




AMP_A_2(4DG8)
?
[Raw transfer]




ATP_A_2(3VNQ)
?
[Raw transfer]




AMP_A_6(4D57)
?
[Raw transfer]




AMP_A_2(4DG8)
?
[Raw transfer]




DG9_A_2(4DG9)
?
[Raw transfer]




APC_A_4(5ES7)
LGRA_BREPA
[Raw transfer]




1 PsiBlast_PDB 64.2939% -38 - C1 -2VSQ - SRFAC_BACSU -
54 HHSearch 63.2940% -38 - C1 -2VSQ - SRFAC_BACSU -
10 PsiBlast_PDB 51.7727% 2 - C1 -4ZXJ - ENTF_ECOLI -
22 PsiBlast_CBE 46.7839% -22 - C1 -5ES8 - LGRA_BREPA -
4 PsiBlast_PDB 46.2739% -26 - C1 -5ES8 - LGRA_BREPA -
57 HHSearch 45.7339% -48 - C1 -5ES8 - LGRA_BREPA -
44 Fugue 44.7129% -58 - C1 -4DG9 - ? -
9 PsiBlast_PDB 43.9876%-109 * C2 *2CBG - ? -
55 HHSearch 43.9724% 5 - C1 -4ZXH - ? -
45 Fugue 43.1541% -20 - C1 -1AMU 6.6 GRSA_ANEMI
5 PsiBlast_PDB 42.8039% -35 - C1 -5ES9 - LGRA_BREPA -
2 PsiBlast_PDB 42.5241% -12 - C1 -1AMU 6.6 GRSA_ANEMI
21 PsiBlast_CBE 41.8441% -12 - C1 -1AMU 6.7 GRSA_ANEMI
61 HHSearch 41.5936% -62 - C1 -4GR5 - ? -
56 HHSearch 41.5925% -6 - C1 -4ZXJ - ENTF_ECOLI -
23 PsiBlast_CBE 41.5939% -30 - C1 -5ES5 - LGRA_BREPA -
25 PsiBlast_CBE 41.4236% -51 - C1 -4GR5 - ? -
16 PsiBlast_PDB 41.3037% -34 - C1 -4D56 7.2 ?
14 PsiBlast_PDB 41.2937% -47 - C1 -4D4H - ? -
6 PsiBlast_PDB 41.2627% -7 - C1 -4ZXH - ? -
15 PsiBlast_PDB 40.9337% -34 - C1 -4D4I 6.8 ?
17 PsiBlast_PDB 40.5737% -34 - C1 -4D57 6.7 ?
13 PsiBlast_PDB 40.5637% -31 - C1 -4D4G 7.3 ?
20 PsiBlast_PDB 40.1431% -21 - C1 -4DG9 8.6 ?
72 HHSearch 39.6940% -17 - C1 -1AMU 6.6 GRSA_ANEMI
19 PsiBlast_PDB 38.6931% -23 - C1 -4DG8 6.4 ?
12 PsiBlast_PDB 37.4440% -50 - C1 -5ES7 4.3 LGRA_BREPA
58 HHSearch 36.6930% -37 - C1 -4DG8 6.4 ?
26 PsiBlast_CBE 36.4234% -30 - C1 -3VNS 6.3 ?
27 PsiBlast_CBE 34.6834% -30 - C1 -3VNQ 7.9 ?