@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu21770: (2016-07-03 )
MKPLLKENSLIQVKHILKAHQNVKDVVIHTPLQRNDRLSERYECNIYLKREDLQVVRSFKLRGAYHKMKQLSSEQTENGVVCASAGNHAQGVAFSCKHLGIHGKIFMPSTTPRQKVSQVELFGKGFIDIILTGDTFDDVYKSAAECCEAESRTFIHPFDDPDVMAGQGTLAVEILNDIDTEPHFLFASVGGGGLLSGVGTYLKNVSPDTKVIAVEPAGAASYFESNKAGHVVTLDKIDKFVDGAAVKKIGEETFRTLETVVDDILLVPEGKVCTSILELYNECAVVAEPAGALSVAALDLYKDQIKGKNVVCVVSGGNNDIGRMQEMKERSLIFEGLQHYFIVNFPQRAGALREFLDEVLGPNDDITRFEYTKKNNKSNGPALVGIELQNKADYGPLIERMNKKPFHYVEVNKDEDLFHLLI

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLV_I_9(1PWH)
SDHL_RAT
[Raw transfer]



PDD_A_3(2ZPU)
SRR_SCHPO
[Raw transfer]



PDD_A_2(2ZR8)
SRR_SCHPO
[Raw transfer]



PLP_A_4(1WTC)
SRR_SCHPO
[Raw transfer]



PLP_A_9(1VE5)
?
[Raw transfer]



PLP_A_9(1VE5)
?
[Raw transfer]



PLP_C_11(1VE5)
?
[Raw transfer]



PLP_A_3(1V71)
SRR_SCHPO
[Raw transfer]



PLP_A_3(1V71)
SRR_SCHPO
[Raw transfer]



PLP_D_12(1VE5)
?
[Raw transfer]



PLP_A_4(3HMK)
SRR_RAT
[Raw transfer]



PLP_C_3(1TDJ)
ILVA_ECOLI
[Raw transfer]



PLP_A_2(3L6B)
SRR_HUMAN
[Raw transfer]



PLP_A_3(3L6C)
SRR_RAT
[Raw transfer]



PLP_A_2(3L6B)
SRR_HUMAN
[Raw transfer]
2 PsiBlast_PDB 80.3238% -69 - C1 -1TDJ 3.5 ILVA_ECOLI
35 HHSearch 78.0543% -85 - C1 -3IAU - THD1_SOLLC -
29 HHSearch 77.0234% -84 - C1 -1V71 4.2 SRR_SCHPO
27 HHSearch 75.1736% -68 - C1 -2GN0 - TDCB_SALTY -
7 PsiBlast_PDB 73.3434% -81 - C1 -1WTC 4.2 SRR_SCHPO
6 PsiBlast_PDB 72.8034% -82 - C1 -1V71 4.2 SRR_SCHPO
1 PsiBlast_PDB 70.8942% -38 - C1 -3IAU - THD1_SOLLC -
26 HHSearch 70.5537% 18 - C1 -1TDJ - ILVA_ECOLI -
8 PsiBlast_PDB 70.4034% -68 - C1 -2ZPU 5.6 SRR_SCHPO
21 PsiBlast_CBE 69.5642% -36 - C1 -3IAU - THD1_SOLLC -
9 PsiBlast_PDB 69.3834% -65 - C1 -2ZR8 7.3 SRR_SCHPO
32 HHSearch 68.1928% -61 - C1 -5CVC - ? -
14 PsiBlast_PDB 68.1328% -59 - C1 -5CVC - ? -
5 PsiBlast_PDB 68.1236% -42 - C1 -2GN2 - TDCB_SALTY -
3 PsiBlast_PDB 68.0036% -44 - C1 -2GN0 - TDCB_SALTY -
22 PsiBlast_CBE 67.1136% -44 - C1 -2GN0 - TDCB_SALTY -
30 HHSearch 67.0328% -52 - C1 -2RKB - SDSL_HUMAN -
34 HHSearch 66.9634% -26 - C1 -1VE5 3.7 ?
23 PsiBlast_CBE 66.9436% -43 - C1 -2GN0 - TDCB_SALTY -
4 PsiBlast_PDB 66.5936% -44 - C1 -2GN1 - TDCB_SALTY -
31 HHSearch 64.0130% -42 - C1 -3L6B 4.7 SRR_HUMAN
11 PsiBlast_PDB 63.2535% -25 - C1 -1VE5 3.7 ?
12 PsiBlast_PDB 57.9030% 2 - C1 -3HMK 4.0 SRR_RAT
10 PsiBlast_PDB 56.9130% 0 - C1 -3L6B 4.7 SRR_HUMAN
24 PsiBlast_CBE 52.9735% -22 - C1 -1VE5 3.5 ?
13 PsiBlast_PDB 52.4130% 6 - C1 -3L6C 4.5 SRR_RAT
25 PsiBlast_CBE 52.2435% -20 - C1 -1VE5 3.8 ?