@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu22370: (2016-07-04 )
MKLAKRVSALTPSTTLAITAKAKELKAAGHDVIGLGAGEPDFNTPQHIIDAAVRSMNEGHTKYTPSGGLAELKNSIAEKFKRDQNIEYKPSQIIVCTGAKHALYTLFQVILDEEDEVIIPTPYWVSYPEQVKLAGGKPVYVEGLEENHFKISPEQLKNAITEKTKAIVINSPSNPTGVMYTEEELSALGEVCLEHDILIVSDEIYEKLTYGGKKHVSIAQLSDRLKEQTVIINGVSKSHSMTGWRIGYAAGSEDIIKAMTNLASHSTSNPTSIAQYGAIAAYNGPSEPLEEMREAFEHRLNTIYAKLIEIPGFSCVKPEGAFYLFPNAKEAAQSCGFKDVDEFVKALLEEEKVAIVPGSGFGSPENVRLSYATSLDLLEEAIERIKRFVEKHS

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]




GLU_D_4(1GDE)
?
[Raw transfer]




PLP_E_5(1GDE)
?
[Raw transfer]




GLU_C_3(1GDE)
?
[Raw transfer]




PLP_F_6(1GDE)
?
[Raw transfer]




PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]




PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]




PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]




PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]




PLP_B_4(1GD9)
?
[Raw transfer]




PLP_A_3(1GD9)
?
[Raw transfer]




PLP_A_3(1GD9)
?
[Raw transfer]




ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]




PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]




PLP_E_5(1GCK)
AAT_THET8
[Raw transfer]




PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]




PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]




PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]




PLP_A_3(1J32)
?
[Raw transfer]




PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]




PLP_B_4(1J32)
?
[Raw transfer]




PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]




EDO_A_11(1VP4)
?
[Raw transfer]




47 HHSearch 98.3145% -93 - C1 -1J32 4.8 ?
1 PsiBlast_PDB 97.3845% -95 - C1 -1J32 - ? -
21 PsiBlast_CBE 95.3545% -96 - C1 -1J32 5.3 ?
45 PsiBlast_CBE 86.7841%-104 - C1 -1O4S 4.5 AAT_THEMA
13 PsiBlast_PDB 86.4341%-101 - C1 -1O4S 4.8 AAT_THEMA
49 HHSearch 86.1043% -99 - C1 -1O4S 4.8 AAT_THEMA
52 HHSearch 85.4246% -53 - C1 -1B5P 4.8 AAT_THET8
36 PsiBlast_CBE 84.7744% -61 - C1 -1GC3 - AAT_THET8 -
8 PsiBlast_PDB 84.5344% -59 - C1 -1GC4 - AAT_THET8 -
7 PsiBlast_PDB 84.3844% -63 - C1 -1GC3 - AAT_THET8 -
31 PsiBlast_CBE 84.3744% -60 - C1 -1GC4 - AAT_THET8 -
32 PsiBlast_CBE 84.1944% -59 - C1 -1GC4 - AAT_THET8 -
34 PsiBlast_CBE 83.4944% -61 - C1 -1GC3 - AAT_THET8 -
35 PsiBlast_CBE 83.2644% -60 - C1 -1GC3 - AAT_THET8 -
38 PsiBlast_CBE 83.1544% -60 - C1 -1GC3 - AAT_THET8 -
3 PsiBlast_PDB 83.1245% -54 - C1 -1B5O 4.9 AAT_THET8
23 PsiBlast_CBE 82.8445% -55 - C1 -1BKG - AAT_THET8 -
2 PsiBlast_PDB 82.5945% -56 - C1 -1BKG - AAT_THET8 -
6 PsiBlast_PDB 82.5545% -55 - C1 -1B5P 4.8 AAT_THET8
37 PsiBlast_CBE 82.4844% -59 - C1 -1GC3 - AAT_THET8 -
26 PsiBlast_CBE 81.8945% -53 - C1 -1GCK 6.5 AAT_THET8
5 PsiBlast_PDB 81.5945% -56 - C1 -1GCK 5.5 AAT_THET8
27 PsiBlast_CBE 81.2045% -54 - C1 -1B5P 4.8 AAT_THET8
25 PsiBlast_CBE 80.9245% -54 - C1 -1B5O 5.3 AAT_THET8
12 PsiBlast_PDB 79.6539% -20 - C1 -1GD9 3.7 ?
43 PsiBlast_CBE 79.0139% -21 - C1 -1GDE 3.4 ?
48 HHSearch 78.6241% -20 - C1 -1GD9 3.7 ?
44 PsiBlast_CBE 78.4139% -19 - C1 -1GD9 3.8 ?
11 PsiBlast_PDB 78.1539% -21 - C1 -1GDE 4.0 ?
29 PsiBlast_CBE 75.4944% -55 - C1 -5BJ4 5.1 AAT_THET8