@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu22830: (2016-07-05 )
MKKVTMLGAGSWGTALALVLTDNGNEVCVWAHRADLIHQINELHENKDYLPNVKLSTSIKGTTDMKEAVSDADVIIVAVPTKAIREVLRQAVPFITKKAVFVHVSKGIEPDSLLRISEIMEIELPSDVRKDIVVLSGPSHAEEVGLRHPTTVTASSKSMRAAEEVQDLFINHNFRVYTNPDIIGVEIGGALKNIIALAAGITDGLGYGDNAKAALITRGLAEIARLGTKMGGNPLTFSGLTGVGDLIVTCTSVHSRNWRAGNLLGKGYKLEDVLEEMGMVVEGVRTTKAAYQLSKKYDVKMPITEALHQVLFNGQKVETAVESLMARGKTHEMEDLVNTFENQVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDE_C_3(1N1E)
GPDA_LEIME
[Raw transfer]



NDE_D_4(1N1E)
GPDA_LEIME
[Raw transfer]



NDP_A_3(1Z82)
?
[Raw transfer]



NDP_A_3(1Z82)
?
[Raw transfer]



NAD_C_3(1EVZ)
GPDA_LEIME
[Raw transfer]



G3P_B_6(1Z82)
?
[Raw transfer]
2 PsiBlast_PDB 83.4437%-112 - C1 -3K96 - GPDA_COXBU -
21 PsiBlast_CBE 83.2237%-115 - C1 -3K96 - GPDA_COXBU -
54 HHSearch 80.6038% -85 * C1 *3K96 - GPDA_COXBU -
57 HHSearch 77.6144%-112 - C1 -1Z82 11.4 ?
5 PsiBlast_PDB 75.2034% -45 - C1 -1JDJ - GPDA_LEIME -
4 PsiBlast_PDB 75.1234% -45 - C1 -1EVZ 6.0 GPDA_LEIME
3 PsiBlast_PDB 75.1034% -46 - C1 -1EVY - GPDA_LEIME -
7 PsiBlast_PDB 75.0334% -48 - C1 -1M67 - GPDA_LEIME -
22 PsiBlast_CBE 74.8734% -44 - C1 -1N1E 13.0 GPDA_LEIME
9 PsiBlast_PDB 74.7934% -45 - C1 -1N1G - GPDA_LEIME -
6 PsiBlast_PDB 74.5834% -44 - C1 -1M66 - GPDA_LEIME -
8 PsiBlast_PDB 74.4834% -45 - C1 -1N1E 12.6 GPDA_LEIME
55 HHSearch 74.1935% -48 - C1 -1EVY - GPDA_LEIME -
44 Fugue 72.2634% -6 - C1 -1EVY - GPDA_LEIME -
56 HHSearch 69.4935% 3 - C1 -1TXG - GPDA_ARCFU -
1 PsiBlast_PDB 68.7142% -39 - C1 -1Z82 11.4 ?
53 HHSearch 68.4032% -4 - C1 -1X0V - GPDA_HUMAN -
24 PsiBlast_CBE 68.2832% -5 - C1 -2PLA - GPD1L_HUMAN -
14 PsiBlast_PDB 67.4430% -3 - C1 -1WPQ - GPDA_HUMAN -
12 PsiBlast_PDB 67.3630% -6 - C1 -1X0X - GPDA_HUMAN -