@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23020: (2016-07-05 )
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTSVELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWSSELHRIFSLQTVGELN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_A_5(1OYY)
RECQ_ECOLI
[Raw transfer]



ADP_B_10(2V1X)
RECQ1_HUMAN
[Raw transfer]



ADP_A_3(2V1X)
RECQ1_HUMAN
[Raw transfer]



ADP_A_3(2V1X)
RECQ1_HUMAN
[Raw transfer]



ADP_A_6(4O3M)

[Raw transfer]



ADP_B_5(4Q47)
?
[Raw transfer]



ADP_A_3(4Q47)
?
[Raw transfer]
56 HHSearch 80.7139% -39 - C1 -1OYW - RECQ_ECOLI -
55 HHSearch 76.6737% -26 - C1 -4Q48 - ? -
21 PsiBlast_CBE 75.6937% -34 - C1 -4Q48 - ? -
2 PsiBlast_PDB 75.5941% -45 - C1 -4TMU - ? -
5 PsiBlast_PDB 75.0337% -35 - C1 -4Q48 - ? -
3 PsiBlast_PDB 74.8042% -41 - C1 -1OYW - RECQ_ECOLI -
22 PsiBlast_CBE 74.7537% -43 - C1 -4Q47 4.7 ?
4 PsiBlast_PDB 74.3237% -38 - C1 -4Q47 4.9 ?
8 PsiBlast_PDB 73.6833% -24 - C1 -2WWY - RECQ1_HUMAN -
54 HHSearch 72.9333% -18 - C1 -2V1X 6.4 RECQ1_HUMAN
27 PsiBlast_CBE 72.8133% -25 - C1 -2V1X 5.9 RECQ1_HUMAN
7 PsiBlast_PDB 72.4633% -24 - C1 -2V1X 6.4 RECQ1_HUMAN
6 PsiBlast_PDB 72.3533% -22 - C1 -4U7D - RECQ1_HUMAN -
1 PsiBlast_PDB 72.2542% -36 - C1 -1OYY 6.0 RECQ_ECOLI
26 PsiBlast_CBE 71.5133% -23 - C1 -2WWY - RECQ1_HUMAN -
9 PsiBlast_PDB 68.6336% -2 - C1 -4CGZ - -
10 PsiBlast_PDB 68.2736% -7 - C1 -4O3M 6.7
52 Fugue 61.6422% 1 - C1 -5AGA - DPOLQ_HUMAN -
20 PsiBlast_PDB 52.7121% 0 - C- -4TYY - -
19 PsiBlast_PDB 52.7121% 0 - C- -4TYN - -