@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23570: (2016-07-06 )
MLNGQKEYRVEKDFLGEKQIEADVYYGIQTLRASENFPITGYKIHEEMINALAIVKKAAALANMDVKRLYEGIGQAIVQAADEILEGKWHDQFIVDPIQGGAGTSMNMNANEVIGNRALEIMGHKKGDYIHLSPNTHVNMSQSTNDVFPTAIHISTLKLLEKLLKTMEDMHSVFKQKAQEFDSVIKMGRTHLQDAVPIRLGQEFEAYSRVLERDIKRIKQSRQHLYEVNMGATAVGTGLNADPEYIKQVVKHLADISGLPLVGADHLVDATQNTDAYTEVSASLKVCMMNMSKIANDLRLMASGPRAGLAEISLPARQPGSSIMPGKVNPVMAELINQIAFQVIGNDNTICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRSFTDNCLKGIEANEKRMKQYVEKSAGVITAVNPHLGYEAAARIAREAIMTGQSVRDLCLQHDVLTEEELDIILNPYEMTKPGIAGKELLEK

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMA_B_11(1FUP)
FUMC_ECOLI
[Raw transfer]



PMA_A_9(1FUP)
FUMC_ECOLI
[Raw transfer]



CIT_A_4(1FUQ)
FUMC_ECOLI
[Raw transfer]



CIT_A_5(2FUS)
FUMC_ECOLI
[Raw transfer]



CIT_G_7(1KQ7)
FUMC_ECOLI
[Raw transfer]



CIT_B_7(2FUS)
FUMC_ECOLI
[Raw transfer]



CIT_A_9(1FUO)
FUMC_ECOLI
[Raw transfer]



LMR_B_5(3RRP)
?
[Raw transfer]



LMR_A_3(3RRP)
?
[Raw transfer]



CIT_I_9(1KQ7)
FUMC_ECOLI
[Raw transfer]



CIT_B_6(1FUQ)
FUMC_ECOLI
[Raw transfer]



CIT_B_11(1FUO)
FUMC_ECOLI
[Raw transfer]



UNL_A_3(3TV2)
?
[Raw transfer]
28 PsiBlast_CBE 99.6072% -93 - C3 -3R6Q - ? -
30 PsiBlast_CBE 98.9072% -94 - C3 -3R6Q - ? -
23 PsiBlast_CBE 98.7972% -91 - C3 -3R6V - ? -
2 PsiBlast_PDB 98.6272% -94 - C3 -3R6Q - ? -
27 PsiBlast_CBE 98.4772% -88 - C3 -3R6V - ? -
68 HHSearch 97.9672% -94 - C3 -3R6Q - ? -
25 PsiBlast_CBE 97.9472% -92 - C3 -3R6V - ? -
26 PsiBlast_CBE 97.7272% -93 - C3 -3R6V - ? -
29 PsiBlast_CBE 97.7072% -91 - C3 -3R6Q - ? -
22 PsiBlast_CBE 97.2872% -91 - C3 -3R6V - ? -
3 PsiBlast_PDB 96.7772% -94 - C3 -3R6V - ? -
21 PsiBlast_CBE 96.6172% -91 - C3 -3R6V - ? -
1 PsiBlast_PDB 95.9972% -88 - C3 -1J3U - ? -
24 PsiBlast_CBE 95.7572% -89 - C3 -3R6V - ? -
34 PsiBlast_CBE 85.0373% -75 - C3 -3R6Y - ? -
32 PsiBlast_CBE 83.0773% -79 - C3 -3R6Y - ? -
31 PsiBlast_CBE 82.9573% -81 - C3 -3R6Y - ? -
33 PsiBlast_CBE 82.4473% -78 - C3 -3R6Y - ? -
4 PsiBlast_PDB 82.2973% -78 - C3 -3R6Y - ? -
10 PsiBlast_PDB 73.7641% -16 - C3 -3TV2 2.8 ?
16 PsiBlast_PDB 73.5242% -13 - C3 -1FUQ 3.7 FUMC_ECOLI
13 PsiBlast_PDB 73.2542% -15 - C3 -1FUO 3.6 FUMC_ECOLI
12 PsiBlast_PDB 72.2742% -12 - C3 -2FUS 3.6 FUMC_ECOLI
15 PsiBlast_PDB 71.9142% -12 - C3 -1FUP 4.1 FUMC_ECOLI
11 PsiBlast_PDB 71.8342% -13 - C3 -1KQ7 3.4 FUMC_ECOLI
47 PsiBlast_CBE 71.5842% -15 - C3 -1FUP 4.2 FUMC_ECOLI
46 PsiBlast_CBE 70.8242% -12 - C3 -1FUQ 3.2 FUMC_ECOLI
45 PsiBlast_CBE 70.5242% -17 - C3 -1FUO 3.6 FUMC_ECOLI
44 PsiBlast_CBE 70.2542% -15 - C3 -2FUS 2.8 FUMC_ECOLI
43 PsiBlast_CBE 70.1942% -15 - C3 -1KQ7 2.4 FUMC_ECOLI
63 PsiBlast_CBE 65.8543% 11 - C3 -3RRP 4.2 ?
62 PsiBlast_CBE 64.9943% 14 - C3 -3RRP 4.3 ?