@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23780: (2016-07-07 )
MKHIAGKRIWITGASGGLGERIAYLCAAEGAHVLLSARREDRLIEIKRKITEEWSGQCEIFPLDVGRLEDIARVRDQIGSIDVLINNAGFGIFETVLDSTLDDMKAMFDVNVFGLIACTKAVLPQMLEQKKGHIINIASQAGKIATPKSSLYSATKHAVLGYSNALRMELSGTGIYVTTVNPGPIQTDFFSIADKGGDYAKNVGRWMLDPDDVAAQITAAIFTKKREINLPRLMNAGTKLYQLFPALVEKLAGRALMKK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_C_9(2JAP)
?
[Raw transfer]




NDP_B_7(2JAP)
?
[Raw transfer]




NAP_A_5(3RKU)
YM71_YEAST
[Raw transfer]




NDP_A_5(2JAP)
?
[Raw transfer]




NAP_D_8(3RKU)
YM71_YEAST
[Raw transfer]




NDP_D_11(2JAP)
?
[Raw transfer]




NAP_A_5(3P19)
?
[Raw transfer]




NAP_C_7(1XG5)
DHR11_HUMAN
[Raw transfer]




NAP_D_8(3P19)
?
[Raw transfer]




NAP_B_6(1XG5)
DHR11_HUMAN
[Raw transfer]




EMO_A_7(3RI3)
ACT3_STRCO
[Raw transfer]




EMO_B_5(3RI3)
ACT3_STRCO
[Raw transfer]




EMO_B_5(3CSD)
ACT3_STRCO
[Raw transfer]




EMO_A_5(2RHR)
ACT3_STRCO
[Raw transfer]




ISZ_G_7(1XR3)
ACT3_STRCO
[Raw transfer]




1 PsiBlast_PDB 76.0635% 14 - C1 -3RKU 8.9 YM71_YEAST
124 HHSearch 75.4029% -84 - C1 -3AI3 - ? -
36 PsiBlast_CBE 74.7733% -96 - C1 -3AI2 - ? -
23 PsiBlast_CBE 74.7235% 14 - C1 -3RKU - YM71_YEAST -
21 PsiBlast_CBE 74.2835% 14 - C1 -3RKU 9.7 YM71_YEAST
22 PsiBlast_CBE 73.8235% 12 - C1 -3RKU - YM71_YEAST -
11 PsiBlast_PDB 73.6333% -96 - C1 -3AI2 - ? -
44 PsiBlast_CBE 73.2133% -92 - C1 -3AI3 - ? -
14 PsiBlast_PDB 73.0333% -96 - C1 -3AI3 - ? -
37 PsiBlast_CBE 72.9933% -95 - C1 -3AI2 - ? -
42 PsiBlast_CBE 72.6033% -94 - C1 -3AI2 - ? -
41 PsiBlast_CBE 72.5133% -96 - C1 -3AI2 - ? -
45 PsiBlast_CBE 72.1533% -94 - C1 -3AI3 - ? -
38 PsiBlast_CBE 71.8433% -96 - C1 -3AI2 - ? -
39 PsiBlast_CBE 71.7633% -94 - C1 -3AI2 - ? -
40 PsiBlast_CBE 71.7333% -97 - C1 -3AI2 - ? -
118 HHSearch 71.0326% -71 - C1 -1CYD - CBR2_MOUSE -
85 PsiBlast_CBE 70.8134% -81 * C1 *2JAP 5.5 ?
43 PsiBlast_CBE 70.2833% -96 - C1 -3AI3 - ? -
87 PsiBlast_CBE 70.2434% -82 - C1 -2JAP 5.7 ?
88 PsiBlast_CBE 68.6734% -82 - C1 -2JAP 11.8 ?
86 PsiBlast_CBE 67.0134% -81 - C1 -2JAP 5.1 ?
4 PsiBlast_PDB 64.7034% -92 - C1 -3P19 3.3 ?
30 PsiBlast_CBE 64.0934% -13 - C1 -1XG5 13.4 DHR11_HUMAN
32 PsiBlast_CBE 62.1134% -91 - C1 -3P19 5.4 ?
31 PsiBlast_CBE 59.8634% -28 - C1 -1XG5 6.6 DHR11_HUMAN
75 PsiBlast_CBE 48.9036% -39 - C1 -3RI3 3.8 ACT3_STRCO
79 PsiBlast_CBE 47.7136% -39 - C1 -3CSD 3.7 ACT3_STRCO
62 PsiBlast_CBE 47.3336% -36 - C1 -1XR3 3.6 ACT3_STRCO
72 PsiBlast_CBE 46.8536% -41 - C1 -2RHR 3.2 ACT3_STRCO
76 PsiBlast_CBE 45.7836% -34 - C1 -3RI3 3.8 ACT3_STRCO