@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23820: (2016-07-07 )
MARKLFTPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQLNTEIPAPVQYERGW

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMN_A_7(1Z41)
NAMA_BACSU
[Raw transfer]




FMN_A_7(1Z41)
NAMA_BACSU
[Raw transfer]




COU_A_11(3L5M)
?
[Raw transfer]




COU_A_9(3L66)
?
[Raw transfer]




8CM_A_3(4UTJ)
?
[Raw transfer]




COU_U_21(2H90)
?
[Raw transfer]




COU_A_9(3L68)
?
[Raw transfer]




FMN_A_3(3GR7)
NAMA_GEOKA
[Raw transfer]




8CM_A_3(4UTM)
?
[Raw transfer]




FMN_A_3(3GR8)
NAMA_GEOKA
[Raw transfer]




FMN_B_6(3GR7)
NAMA_GEOKA
[Raw transfer]




COU_A_3(4UTI)
?
[Raw transfer]




FMN_A_5(1Z42)
NAMA_BACSU
[Raw transfer]




FMN_A_3(3GR7)
NAMA_GEOKA
[Raw transfer]




FMN_A_3(1Z48)
NAMA_BACSU
[Raw transfer]




FMN_A_5(1Z44)
NAMA_BACSU
[Raw transfer]




NDP_A_3(5CPM)
?
[Raw transfer]




CYH_A_3(1GVQ)
?
[Raw transfer]




FMN_B_7(3GR8)
NAMA_GEOKA
[Raw transfer]




NDP_B_5(5CPM)
?
[Raw transfer]




COU_A_5(4UTL)
?
[Raw transfer]




IPA_A_5(2ABA)
?
[Raw transfer]




112 HHSearch 97.98100% -94 - C2 -1Z41 7.1 NAMA_BACSU
2 PsiBlast_PDB 97.6597% -93 - C2 -1Z42 9.4 NAMA_BACSU
3 PsiBlast_PDB 97.5297% -95 - C2 -1Z44 9.4 NAMA_BACSU
1 PsiBlast_PDB 97.3397% -94 - C2 -1Z41 7.1 NAMA_BACSU
4 PsiBlast_PDB 97.2497% -92 - C2 -1Z48 6.9 NAMA_BACSU
111 HHSearch 91.9667% -95 - C2 -3GR7 7.8 NAMA_GEOKA
5 PsiBlast_PDB 91.7566% -95 - C2 -3GR7 7.8 NAMA_GEOKA
22 PsiBlast_CBE 91.2166% -95 - C2 -3GR7 7.7 NAMA_GEOKA
21 PsiBlast_CBE 91.0766% -92 - C2 -3GR8 8.2 NAMA_GEOKA
6 PsiBlast_PDB 90.8466% -93 - C2 -3GR8 8.1 NAMA_GEOKA
115 HHSearch 77.4550% -29 - C2 -3HGJ - ? -
31 PsiBlast_CBE 77.2648% -30 - C2 -3HGJ - ? -
29 PsiBlast_CBE 77.0048% -29 - C2 -3HGJ - ? -
30 PsiBlast_CBE 76.8848% -28 - C2 -3HGJ - ? -
33 PsiBlast_CBE 76.7848% -28 - C2 -3HF3 - ? -
28 PsiBlast_CBE 76.4752% -25 - C2 -3KRU - ? -
10 PsiBlast_PDB 76.3248% -27 - C2 -3HGJ - ? -
32 PsiBlast_CBE 76.3148% -26 - C2 -3HF3 - ? -
34 PsiBlast_CBE 76.1848% -30 - C2 -3HF3 - ? -
25 PsiBlast_CBE 75.5452% -28 - C2 -3KRZ - ? -
42 PsiBlast_CBE 73.6639% -5 - C2 -4UTL 3.1 ?
47 PsiBlast_CBE 73.3239% -4 - C2 -3L66 3.2 ?
41 PsiBlast_CBE 73.2139% -4 - C2 -4UTM 3.1 ?
19 PsiBlast_PDB 73.2039% -5 - C2 -2H90 2.4 ?
45 PsiBlast_CBE 73.1339% -6 - C2 -4UTI 3.0 ?
44 PsiBlast_CBE 73.1339% -5 - C2 -4UTJ 3.1 ?
12 PsiBlast_PDB 73.1339% -5 - C2 -5CPM 3.1 ?
49 PsiBlast_CBE 72.8039% -2 - C2 -3L68 3.2 ?
16 PsiBlast_PDB 72.6939% -5 - C2 -3L5M 3.2 ?
37 PsiBlast_CBE 72.6539% -1 - C2 -5CPM 3.0 ?
55 PsiBlast_CBE 56.4932% 10 - C2 -2ABA 3.4 ?
65 PsiBlast_CBE 56.4232% 8 - C2 -1GVQ 2.9 ?