@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23860: (2016-07-07 )
MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKNVVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PG_A_3(3FWN)
6PGD_ECOLI
[Raw transfer]




6PG_B_4(2ZYA)
6PGD_ECOLI
[Raw transfer]




6PG_B_5(3FWN)
6PGD_ECOLI
[Raw transfer]




6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]




NDP_G_7(1PGO)
6PGD_SHEEP
[Raw transfer]




NBP_A_4(1PGN)
6PGD_SHEEP
[Raw transfer]




6PG_C_3(1PGP)
6PGD_SHEEP
[Raw transfer]




6PG_B_7(2W8Z)
?
[Raw transfer]




GLO_A_3(2ZYD)
6PGD_ECOLI
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




ATR_B_4(3FWN)
6PGD_ECOLI
[Raw transfer]




MES_A_4(4GWK)
6PGD_HUMAN
[Raw transfer]




2AM_I_9(1PGQ)
6PGD_SHEEP
[Raw transfer]




FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]




FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]




TRS_A_4(2W90)
?
[Raw transfer]




22 PsiBlast_CBE 88.7883%-101 - C2 -2W90 2.7 ?
2 PsiBlast_PDB 87.9083%-102 - C2 -2W90 - ? -
1 PsiBlast_PDB 87.8383% -99 - C2 -2W8Z - ? -
21 PsiBlast_CBE 87.3583%-100 - C2 -2W8Z 2.7 ?
23 PsiBlast_CBE 82.5970% -44 - C2 -3FWN 6.3 6PGD_ECOLI
24 PsiBlast_CBE 82.5169% -42 - C2 -2ZYD 3.2 6PGD_ECOLI
6 PsiBlast_PDB 82.4669% -48 - C2 -2ZYD - 6PGD_ECOLI -
65 HHSearch 82.1170% -48 - C2 -2ZYD - 6PGD_ECOLI -
5 PsiBlast_PDB 81.9269% -45 - C2 -2ZYA - 6PGD_ECOLI -
4 PsiBlast_PDB 81.9070% -49 - C2 -3FWN 4.6 6PGD_ECOLI
3 PsiBlast_PDB 81.1470% -44 - C2 -2ZYG - ? -
25 PsiBlast_CBE 80.8269% -43 - C2 -2ZYA 3.9 6PGD_ECOLI
8 PsiBlast_PDB 79.6067% -27 - C2 -2IYO 3.9 6PGD_LACLM
29 PsiBlast_CBE 79.4767% -26 - C2 -2IZ1 - 6PGD_LACLM -
10 PsiBlast_PDB 79.2567% -27 - C2 -2IZ1 - 6PGD_LACLM -
66 HHSearch 79.0267% -27 * C2 *2IZ1 - 6PGD_LACLM -
9 PsiBlast_PDB 78.5867% -26 - C2 -2IZ0 - 6PGD_LACLM -
30 PsiBlast_CBE 78.3767% -29 - C2 -2IZ0 - 6PGD_LACLM -
26 PsiBlast_CBE 78.3367% -30 - C2 -2IYP - 6PGD_LACLM -
27 PsiBlast_CBE 78.2667% -28 - C2 -2IYP - 6PGD_LACLM -
13 PsiBlast_PDB 73.8556% -12 - C2 -1PGP 3.2 6PGD_SHEEP
19 PsiBlast_PDB 73.2255% -15 - C2 -2P4Q 3.5 6PGD1_YEAST
12 PsiBlast_PDB 73.2056% -11 - C2 -1PGO 7.6 6PGD_SHEEP
17 PsiBlast_PDB 73.0855% -8 - C2 -4GWG 2.8 6PGD_HUMAN
11 PsiBlast_PDB 73.0856% -15 - C2 -1PGN 8.0 6PGD_SHEEP
64 HHSearch 73.0053% -24 - C2 -2P4Q 3.5 6PGD1_YEAST
14 PsiBlast_PDB 72.9956% -16 - C2 -1PGQ 4.5 6PGD_SHEEP
18 PsiBlast_PDB 72.8555% -8 - C2 -4GWK 2.8 6PGD_HUMAN
67 HHSearch 72.2655% -8 - C2 -4GWG 2.8 6PGD_HUMAN