@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu24460: (2016-07-08 )
MKLEKLRNLFGQLGIDGMLITSNTNVRYMTGFTGSAGLAVISGDKAAFITDFRYTEQAKVQVKGFEIIEHGGSLIQTTADTVESFGIKRLGFEQNSMTYGTYASYSAVISDAELVPVAESVEKLRLIKSSEEIKILEEAAKIADDAFRHILTFMKPGISEIAVANELEFYMRSQGADSSSFDMIVASGLRSSLPHGVASDKLIESGDLVTLDFGAYYKGYCSDITRTVAVGQPSDQLKEIYQVVFDAQALGVAHIKPGMTGKEADALTRDHIAAKGYGDYFGHSTGHGLGMEVHESPGLSVRSSAILEPGMVVTVEPGIYIPETGGVRIEDDIVITENGNRTITHSPKELIIL

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRD_A_8(2BHB)
AMPP_ECOLI
[Raw transfer]




P6G_A_6(3CTZ)
XPP1_HUMAN
[Raw transfer]




PG4_A_3(1WLR)
AMPP_ECOLI
[Raw transfer]




MPD_A_5(2BWT)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(1N51)
AMPP_ECOLI
[Raw transfer]

-

IPA_A_7(1WL6)
AMPP_ECOLI
[Raw transfer]




LEU_A_3(2BH3)
AMPP_ECOLI
[Raw transfer]




MRD_A_6(2BWW)
AMPP_ECOLI
[Raw transfer]




LEU_A_3(1A16)
AMPP_ECOLI
[Raw transfer]




LEU_A_3(2BN7)
AMPP_ECOLI
[Raw transfer]




CHAIN_B_2(2BHD)
AMPP_ECOLI
[Raw transfer]

-

CHAIN_B_2(2BHA)
AMPP_ECOLI
[Raw transfer]

-

CHAIN_B_2(2V3Z)
AMPP_ECOLI
[Raw transfer]

-

1 PsiBlast_PDB 93.2665% -95 - C1 -3Q6D - ? -
21 PsiBlast_CBE 92.5365% -94 - C1 -3Q6D - ? -
23 PsiBlast_CBE 90.8565% -96 - C1 -3Q6D - ? -
22 PsiBlast_CBE 90.7565% -90 - C1 -3Q6D - ? -
48 HHSearch 77.0164% 5 * C1 *3Q6D - ? -
2 PsiBlast_PDB 65.2740% 37 - C1 -2ZSG - ? -
49 HHSearch 64.0439% 7 - C1 -2ZSG - ? -
54 HHSearch 63.4643% -2 - C1 -1WY2 - PEPQ_PYRHO -
3 PsiBlast_PDB 63.1343% 22 - C1 -1WY2 - PEPQ_PYRHO -
24 PsiBlast_CBE 62.8643% 21 - C1 -1WY2 - PEPQ_PYRHO -
70 Fugue 61.2241% -5 - C1 -1PV9 - PEPQ_PYRFU -
4 PsiBlast_PDB 61.2241% 23 - C1 -1PV9 - PEPQ_PYRFU -
5 PsiBlast_PDB 58.8836% 18 - C1 -1WN1 - ? -
53 HHSearch 58.1038% 17 - C1 -1WN1 - ? -
25 PsiBlast_CBE 57.7536% 18 - C1 -1WN1 - ? -
69 Fugue 57.5638% 36 - C1 -1WN1 - ? -
6 PsiBlast_PDB 57.4536% 19 - C1 -2HOW - ? -
50 HHSearch 55.3135% 25 - C1 -4FKC - ? -
52 HHSearch 53.8226% -9 - C1 -4R60 - ? -
10 PsiBlast_PDB 52.1828% -0 - C1 -4R60 - ? -
66 HHSearch 50.5536% -28 - C1 -2V3Z 5.3 AMPP_ECOLI
15 PsiBlast_PDB 48.8433% -22 - C1 -1WL6 2.7 AMPP_ECOLI
38 PsiBlast_CBE 48.0433% -29 - C1 -2BWT 3.1 AMPP_ECOLI
20 PsiBlast_PDB 47.8433% -21 - C1 -2BHD 3.2 AMPP_ECOLI
27 PsiBlast_CBE 47.8333% -23 - C1 -2BN7 2.6 AMPP_ECOLI
34 PsiBlast_CBE 47.8133% -23 - C1 -1A16 3.9 AMPP_ECOLI
16 PsiBlast_PDB 47.4533% -22 - C1 -1WLR 2.8 AMPP_ECOLI
14 PsiBlast_PDB 47.2933% -20 - C1 -1N51 7.0 AMPP_ECOLI
28 PsiBlast_CBE 46.7733% -23 - C1 -2BH3 2.6 AMPP_ECOLI
17 PsiBlast_PDB 46.4933% -20 - C1 -2BHA 5.1 AMPP_ECOLI
40 PsiBlast_CBE 46.4833% -22 - C1 -2BWW 3.0 AMPP_ECOLI
18 PsiBlast_PDB 46.1233% -21 - C1 -2BHB 3.4 AMPP_ECOLI
45 PsiBlast_CBE 16.4033% 25 - C1 -3CTZ 2.9 XPP1_HUMAN