@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu25210: (2016-07-10 )
MGNRIPDEIVDQVQKSADIVEVIGDYVQLKKQGRNYFGLCPFHGESTPSFSVSPDKQIFHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMAEAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRGFSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRALGSQQPKYMNSPETPLFHKSKLLYNFYKARLHIRKQERAVLFEGFADVISAVSSDVKESIATMGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASELLQKKGCKVRVAMIPDGLDPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLSGSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQKRLRPAYENAERLLLAHMLRDRSVIKKVIDRVGFQFNIDEHRALAAYLYAFYEEGAELTPQHLMARVTDDHISQLLSDILMLQVNQELSEAELSDYVKKVLNQRNWSMIKEKEAERAEAERQKDFLRAASLAQEIVTLNRSLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]




GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]




UTP_A_5(4EDR)
DNAG_STAAU
[Raw transfer]




CTP_A_2(4EE1)
DNAG_STAAU
[Raw transfer]




ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]




ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]




0O2_A_3(4EDV)
DNAG_STAAU
[Raw transfer]




G4P_A_3(4EDT)
DNAG_STAAU
[Raw transfer]




NACID_C_1(3B39)
DNAG_ECOLI
[Raw transfer]

-

BEN_A_4(4EDR)
DNAG_STAAU
[Raw transfer]




NACID_D_2(3B39)
DNAG_ECOLI
[Raw transfer]

-

BEN_A_4(4EDK)
DNAG_STAAU
[Raw transfer]




44 Fugue 84.7341%-113 - C3 -4EDK 7.2 DNAG_STAAU
7 PsiBlast_PDB 83.0442% -95 - C3 -4EE1 6.2 DNAG_STAAU
5 PsiBlast_PDB 82.8142% -95 - C3 -4EDT 4.8 DNAG_STAAU
25 HHSearch 82.3541% -97 - C3 -4EDG 6.7 DNAG_STAAU
3 PsiBlast_PDB 82.2142% -95 - C3 -4EDK 7.2 DNAG_STAAU
6 PsiBlast_PDB 82.0742% -95 - C3 -4EDV 4.3 DNAG_STAAU
4 PsiBlast_PDB 82.0542% -94 - C3 -4EDR 6.8 DNAG_STAAU
2 PsiBlast_PDB 81.9842% -96 - C3 -4EDG 6.7 DNAG_STAAU
1 PsiBlast_PDB 81.1842% -99 - C3 -4E2K - DNAG_STAAU -
23 HHSearch 80.3931% -54 * C3 *2AU3 - DNAG_AQUAE -
8 PsiBlast_PDB 76.5135% -25 - C3 -2AU3 - DNAG_AQUAE -
12 PsiBlast_PDB 74.8933% -92 - C3 -1EQN - DNAG_ECOLI -
21 PsiBlast_CBE 74.1933% -97 - C3 -3B39 6.6 DNAG_ECOLI
11 PsiBlast_PDB 73.1833% -96 - C3 -3B39 4.9 DNAG_ECOLI
10 PsiBlast_PDB 72.5633% -95 - C3 -1DDE - DNAG_ECOLI -
9 PsiBlast_PDB 72.5233% -92 - C3 -1DD9 - DNAG_ECOLI -
24 HHSearch 71.4233% -91 - C3 -1DD9 - DNAG_ECOLI -
45 Fugue 71.1332% -89 - C3 -1DD9 - DNAG_ECOLI -
22 PsiBlast_CBE 59.8965%-199 - C3 -1D0Q - DNAG_GEOSE -
27 HHSearch 59.3265%-195 - C3 -1D0Q - DNAG_GEOSE -