@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu25670: (2016-07-10 )
MEKVVCIGCGVTIQTEDKTGLGYAPPASLTKENVICQRCFRLKNYNEIQDVSLTDDDFLNILHGIGETDSLVVKIVDIFDFNGSWINGLQRLVGGNPILLVGNKADILPKSLKRERLIQWMKREAKELGLKPVDVFLVSAGRGQGIREVIDAIEHYRNGKDVYVVGCTNVGKSTFINRIIKEVSGEEDIITTSQFPGTTLDAIEIPLDDGSSLYDTPGIINNHQMAHYVNKKDLKILSPKKELKPRTFQLNDQQTLYFGGLARFDYVSGERSPFICYMPNELMIHRTKLENADALYEKHAGELLTPPGKDEMDEFPELVAHTFTIKDKKTDIVFSGLGWVTVHDADKKVTAYAPKGVHVFVRRSLI

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DGI_A_2(3H2Y)
?
[Raw transfer]



DGI_A_2(3H2Y)
?
[Raw transfer]



GDP_B_4(3EC1)
?
[Raw transfer]



GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GDP_A_3(3EC1)
?
[Raw transfer]



GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]



GDP_A_3(3EC1)
?
[Raw transfer]



GDP_A_3(3EC1)
?
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]
21 PsiBlast_CBE 89.8364%-144 - C2 -3EC1 5.5 ?
65 Fugue 89.2264%-139 - C2 -3EC1 5.1 ?
37 HHSearch 88.7164%-139 - C2 -3EC1 5.1 ?
2 PsiBlast_PDB 88.5464%-139 - C2 -3EC1 5.1 ?
36 HHSearch 83.5469% -57 - C2 -3H2Y 7.1 ?
1 PsiBlast_PDB 83.0568% -57 - C2 -3H2Y 7.1 ?
39 HHSearch 48.7823% -78 * C2 *1PUJ 7.0 RBGA_BACSU
44 HHSearch 43.9722%-124 - C2 -3CNL 7.5 RBGA_THEMA
38 HHSearch 40.0425% -18 - C2 -2YV5 - RSGA_AQUAE -
41 HHSearch 37.4420% -8 - C2 -1U0L - RSGA_THEMA -
5 PsiBlast_PDB 36.4825% -23 - C2 -1PUJ - RBGA_BACSU -
47 HHSearch 35.7922% -9 - C2 -2RCN - RSGA_SALTY -
53 HHSearch 35.4931%-134 - C2 -1SVI 4.6 ENGB_BACSU
66 Fugue 34.0218% 8 - C2 -1PUJ - RBGA_BACSU -
4 PsiBlast_PDB 33.4435% -44 - C2 -2YV5 - RSGA_AQUAE -
18 PsiBlast_PDB 33.0831% 4 - C2 -2FMX - SAR1B_CRIGR -
8 PsiBlast_PDB 32.8537%-163 - C2 -3CNN - RBGA_THEMA -
26 PsiBlast_CBE 32.7931% -4 - C2 -1F6B - SAR1B_CRIGR -
11 PsiBlast_PDB 32.2642%-186 - C5 -1XZQ - ? -
28 PsiBlast_CBE 32.2531% -6 - C2 -2FA9 - SAR1B_CRIGR -
51 HHSearch 31.9532% -53 - C2 -3IEV 7.9 ERA_AQUAE
54 HHSearch 28.7231% -50 - C2 -1WF3 8.1 ERA_THET8