@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu25730: (2016-07-10 )
MKIGLIGLGKMGINIGKQFIDRNHQVVGYDVNQAAVDELKAYGAEGTTNLKEFISLLHPPRILWVMVPHGIVDAVLRDVSPLLSKGDMIIEAGNSHYKESIRRYNQMKEAGIHYLDAGTSGGMEGARHGACFMVGGDHEAWEIVEPLFRDTAVENGYLYAGEAGSGHFLKMIHNGIEYGMMAAIGEGFEVLENSQFDFDYEKVARVWNHGSVIRSWLMGLTERAFAKDAKLDQIKGIMHSSGEGKWTVETALDLQTATPVIAMSLMMRYRSLTDDTFTGKVVAALRNEFGGHATEKK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PG_A_3(2W90)
?
[Raw transfer]




6PG_C_3(1PGP)
6PGD_SHEEP
[Raw transfer]




6PG_B_5(3FWN)
6PGD_ECOLI
[Raw transfer]




6PG_B_4(2ZYA)
6PGD_ECOLI
[Raw transfer]




6PG_A_3(3FWN)
6PGD_ECOLI
[Raw transfer]




6PG_A_3(2W8Z)
?
[Raw transfer]




6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]




6PG_A_3(2ZYA)
6PGD_ECOLI
[Raw transfer]




6PG_B_7(2W8Z)
?
[Raw transfer]




POP_A_5(1PGN)
6PGD_SHEEP
[Raw transfer]




GLO_A_3(2ZYD)
6PGD_ECOLI
[Raw transfer]




NDP_G_7(1PGO)
6PGD_SHEEP
[Raw transfer]




3PG_A_5(4GWK)
6PGD_HUMAN
[Raw transfer]




FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]




FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




MES_A_4(4GWK)
6PGD_HUMAN
[Raw transfer]




EDO_A_5(3OBB)
SERDH_PSEAE
[Raw transfer]




22 PsiBlast_CBE 70.4735% 4 - C1 -2W90 - ? -
1 PsiBlast_PDB 70.1335% 13 - C1 -2W8Z 3.2 ?
7 PsiBlast_PDB 70.0536% 1 - C1 -2P4Q 3.5 6PGD1_YEAST
21 PsiBlast_CBE 69.9935% 7 - C1 -2W8Z 2.6 ?
2 PsiBlast_PDB 69.8835% 12 - C1 -2W90 3.7 ?
90 HHSearch 68.2033% 1 * C1 *2IZ1 - 6PGD_LACLM -
9 PsiBlast_PDB 67.9233% 6 - C1 -2ZYD - 6PGD_ECOLI -
12 PsiBlast_PDB 67.6533% 9 - C1 -1PGN 4.3 6PGD_SHEEP
8 PsiBlast_PDB 67.6133% 5 - C1 -2ZYA 3.8 6PGD_ECOLI
16 PsiBlast_PDB 67.6033% 7 - C1 -2PGD - 6PGD_SHEEP -
11 PsiBlast_PDB 67.4931% 6 - C1 -2ZYG - ? -
10 PsiBlast_PDB 67.4232% 9 - C1 -3FWN 3.3 6PGD_ECOLI
13 PsiBlast_PDB 67.2133% 9 - C1 -1PGO 3.2 6PGD_SHEEP
18 PsiBlast_PDB 67.1833% 10 - C1 -4GWK 2.8 6PGD_HUMAN
17 PsiBlast_PDB 66.9633% 11 - C1 -4GWG 2.9 6PGD_HUMAN
14 PsiBlast_PDB 66.3833% 6 - C1 -1PGP 3.5 6PGD_SHEEP
32 PsiBlast_CBE 66.2233% 11 - C1 -2JKV - 6PGD_HUMAN -
19 PsiBlast_PDB 66.0633% 9 - C1 -2JKV - 6PGD_HUMAN -
31 PsiBlast_CBE 66.0532% 8 - C1 -3FWN 4.6 6PGD_ECOLI
30 PsiBlast_CBE 65.9533% 8 - C1 -2ZYA 4.1 6PGD_ECOLI
29 PsiBlast_CBE 65.8733% 10 - C1 -2ZYD 3.4 6PGD_ECOLI
3 PsiBlast_PDB 65.8231% 16 - C1 -2IYO 4.1 6PGD_LACLM
71 HHSearch 59.3641% -1 - C1 -2P4Q 3.5 6PGD1_YEAST
73 HHSearch 57.8338% -2 - C1 -4GWG 2.9 6PGD_HUMAN