@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27410: (2016-07-12 )
MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNAQKAIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRLEGNFWDIGEGPSGPNTEIFYDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMTVDHEGFEEEMNQQRERARNARQDVGSMQVQGGALRDVTVESTFVGYSQTKADANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQVGDYSLELCGGCHVRNTAEIGLFKIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIVLGAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGGGGRPDMAQAGGKQPEKLEEALASVEDWVKSVL

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]




A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]




A5A_A_2(4XEM)
?
[Raw transfer]




A5A_A_2(4XEM)
?
[Raw transfer]




A5A_B_9(4XEO)
SYAC_HUMAN
[Raw transfer]




A5A_A_3(4XEO)
SYAC_HUMAN
[Raw transfer]




SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]




SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]




G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]




G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]




G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]




G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]




ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]




ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]




ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]




GLY_B_2(1YFT)
SYA_AQUAE
[Raw transfer]




ALA_D_4(1YFS)
SYA_AQUAE
[Raw transfer]




ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]




SER_B_2(1YGB)
SYA_AQUAE
[Raw transfer]




37 HHSearch 81.4329% 24 * C1 *3WQY - SYA_ARCFU -
17 PsiBlast_PDB 79.8726% 27 - C1 -3WQY - SYA_ARCFU -
18 PsiBlast_PDB 78.4626% 26 - C1 -3WQZ - SYA_ARCFU -
40 HHSearch 74.3850% 21 - C1 -3HY0 5.7 SYA_ECOLI
11 PsiBlast_PDB 73.8648% 34 - C1 -3HXZ - SYA_ECOLI -
14 PsiBlast_PDB 73.8546% 6 - C1 -1RIQ - SYA_AQUAE -
26 PsiBlast_CBE 73.7748% 34 - C1 -3HXZ - SYA_ECOLI -
12 PsiBlast_PDB 73.6548% 33 - C1 -3HY0 5.7 SYA_ECOLI
25 PsiBlast_CBE 73.5748% 32 - C1 -3HXZ - SYA_ECOLI -
27 PsiBlast_CBE 73.5048% 34 - C1 -3HXZ - SYA_ECOLI -
6 PsiBlast_PDB 73.3748% 33 - C1 -3HXU 8.8 SYA_ECOLI
21 PsiBlast_CBE 73.3646% 10 - C1 -1YFS 2.5 SYA_AQUAE
8 PsiBlast_PDB 73.3448% 34 - C1 -3HXW 8.7 SYA_ECOLI
7 PsiBlast_PDB 73.2748% 32 - C1 -3HXV 5.8 SYA_ECOLI
10 PsiBlast_PDB 73.2548% 30 - C1 -3HXY 8.8 SYA_ECOLI
9 PsiBlast_PDB 73.2548% 31 - C1 -3HXX 10.1 SYA_ECOLI
24 PsiBlast_CBE 72.8848% 33 - C1 -3HY0 5.7 SYA_ECOLI
1 PsiBlast_PDB 72.8746% 4 - C1 -3HTZ - SYA_AQUAE -
3 PsiBlast_PDB 72.8346% 5 - C1 -1YFS 2.6 SYA_AQUAE
13 PsiBlast_PDB 72.7948% 29 - C1 -3HY1 7.6 SYA_ECOLI
2 PsiBlast_PDB 72.7246% 6 - C1 -1YFR 4.1 SYA_AQUAE
5 PsiBlast_PDB 72.4646% 8 - C1 -1YGB 3.5 SYA_AQUAE
4 PsiBlast_PDB 71.9846% 10 - C1 -1YFT 3.1 SYA_AQUAE
22 PsiBlast_CBE 71.5446% 7 - C1 -1YFR 5.3 SYA_AQUAE
41 HHSearch 65.2545% 17 - C1 -4XEM 8.8 ?
16 PsiBlast_PDB 64.5043% 22 - C1 -4XEO 9.1 SYAC_HUMAN
15 PsiBlast_PDB 64.4943% 16 - C1 -4XEM 8.8 ?
28 PsiBlast_CBE 64.2843% 30 - C1 -4XEO 9.1 SYAC_HUMAN