@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27870: (2016-07-13 )
MSKKTIAVIGSGAAALSLAAAFPPSYEVTVITKKSVKNSNSVYAQGGIAAAYAKDDSIEAHLEDTLYAGCGHNNLAIVADVLHDGKMMVQSLLERGFPFDRNERGGVCLGREGAHSYNRIFHAGGDATGRLLIDYLLKRINSKIKLIENETAADLLIEDGRCIGVMTKDSKGRLKVRHADEVVLAAGGCGNLFLHHTNDLTVTGDGLSLAYRAGAELTDLEFTQFHPTLLVKNGVSYGLVSEAVRGEGGCLVDENGRRIMAERHPLGDLAPRDIVSRVIHEEMAKGNRVYIDFSAISDFETRFPTITAICEKAGIDIHSGKIPVAPGMHFLMGGVSVNRWGETTVPGLYAIGETACSGLHGANRLASNSLLEALVFGKRAAEHIIQKPVYNRQYQSGLETSVFYEVPDIEGHELQSKMTSHMSILREQSSLIELSIWLHTLPFQEVNVKDITIRQMELSHLWQTAKLMTFSALLREESRGAHFRTDFPHAEVSWQGRQIVHTKKGTKIRKNEGIWNNESFTAEKITESLFS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(1KNP)
NADB_ECOLI
[Raw transfer]



FAD_A_4(1KNR)
NADB_ECOLI
[Raw transfer]



FAD_A_5(2E5V)
NADB_SULTO
[Raw transfer]



FAD_A_5(2E5V)
NADB_SULTO
[Raw transfer]



TEO_A_11(1YQ3)
SDHA_CHICK
[Raw transfer]



3NP_A_10(1ZP0)
SDHA_PIG
[Raw transfer]



3NP_A_11(1YQ4)
SDHA_CHICK
[Raw transfer]
113 HHSearch 87.6733% 0 - C- -2H88 - SDHA_CHICK -
45 PsiBlast_CBE 85.0432% 0 - C- -2FBW - SDHA_CHICK -
44 PsiBlast_CBE 85.0432% 0 - C- -2FBW - SDHA_CHICK -
43 PsiBlast_CBE 85.0432% 0 - C- -2H88 - SDHA_CHICK -
42 PsiBlast_CBE 85.0432% 0 - C- -2H88 - SDHA_CHICK -
30 PsiBlast_CBE 84.3131% 0 - C- -1KF6 - FRDA_ECOLI -
11 PsiBlast_PDB 84.3131% 0 - C- -1KF6 - FRDA_ECOLI -
116 HHSearch 82.2632% 0 - C- -1KF6 - FRDA_ECOLI -
2 PsiBlast_PDB 76.8038% -5 - C1 -1KNP 12.3 NADB_ECOLI
1 PsiBlast_PDB 75.4638% -33 - C1 -1CHU - NADB_ECOLI -
3 PsiBlast_PDB 75.3338% -10 - C1 -1KNR 11.8 NADB_ECOLI
115 HHSearch 73.4638% -23 - C1 -1CHU - NADB_ECOLI -
102 Fugue 72.1837% -8 - C1 -1CHU - NADB_ECOLI -
21 PsiBlast_CBE 71.5935% -19 - C1 -2E5V - NADB_SULTO -
4 PsiBlast_PDB 71.4135% -19 - C1 -2E5V 9.4 NADB_SULTO
112 HHSearch 70.9529% 10 - C1 -2BS2 - FRDA_WOLSU -
18 PsiBlast_PDB 70.8631% 18 - C1 -4YTM - ? -
60 PsiBlast_CBE 70.7432% 4 - C1 -3AEG - SDHA_PIG -
19 PsiBlast_PDB 70.7431% 19 - C1 -4YTN - ? -
117 HHSearch 70.6636% -7 - C1 -2E5V 13.0 NADB_SULTO
46 PsiBlast_CBE 68.6832% -3 - C1 -1YQ4 2.8 SDHA_CHICK
77 PsiBlast_CBE 68.5932% 7 - C1 -1ZP0 2.7 SDHA_PIG
47 PsiBlast_CBE 68.2732% 1 - C1 -1YQ3 4.6 SDHA_CHICK