@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27880: (2016-07-14 )
MIYLDYAATTPICEEALTVYQKLSMDMYGNASSLHDAGGKAKHILEYCREKIANIIGGEASGIYFTSGGTESNFLAIQSLLNGLPKTKRHFITTAMEHQSIHNCAAFLEQQGYDVTVIEPNEYGLITEEILLTHIRPETGLVSIQHANSETGIIQPIQHLSSYLHNKGILLHCDAVQTFGKIPINTKNLGVDALSMSSHKIHGPKGVGAVYIRPDVPWKPVYPLTTHEYGFRAGTVNVPGIGAFTAAAELIVSEMEKQISRNEALRTYFLDQIRIRSLPVTLAADTSKAECLPHIIGCFFHSFEGQYVMLECNRSNICISTGSACSAGYHGPSETMKALRKTEQEALQFIRISFGRHTTAEQLEQLLHTFTVLWEQKKGEFDIDRRIKANGRQQA

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_5(4R5F)
ISCS2_ARCFU
[Raw transfer]




PLP_B_9(4EB5)
ISCS2_ARCFU
[Raw transfer]




PLP_A_5(4EB5)
ISCS2_ARCFU
[Raw transfer]




PMP_A_5(4HVK)
ISCS2_ARCFU
[Raw transfer]




PLP_D_4(1ECX)
?
[Raw transfer]




PLP_C_3(1ECX)
?
[Raw transfer]




PLP_A_3(3VAX)
?
[Raw transfer]




PLP_A_3(3VAX)
?
[Raw transfer]




PLP_B_8(4EB7)
ISCS2_ARCFU
[Raw transfer]




PMP_A_5(4HVK)
ISCS2_ARCFU
[Raw transfer]




PLP_A_4(4EB7)
ISCS2_ARCFU
[Raw transfer]




PLP_A_5(3LVJ)
ISCS_ECO57
[Raw transfer]




PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]




PLP_B_4(3VAX)
?
[Raw transfer]




PLP_A_6(1EG5)
?
[Raw transfer]




PLP_A_6(1EG5)
?
[Raw transfer]




PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]




PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]




PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]




PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]




PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]




PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]




PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]




GOL_A_5(4LW2)
CSDA_ECOLI
[Raw transfer]




CYS_F_6(1ECX)
?
[Raw transfer]




CYS_E_5(1ECX)
?
[Raw transfer]




CSS_F_6(1ELU)
?
[Raw transfer]




23 PsiBlast_CBE 87.8134%-102 - C1 -4EB5 3.7 ISCS2_ARCFU
5 PsiBlast_PDB 87.4434% -93 - C1 -4EB7 3.2 ISCS2_ARCFU
6 PsiBlast_PDB 87.3434%-100 - C1 -4HVK 3.7 ISCS2_ARCFU
4 PsiBlast_PDB 86.6734% -95 - C1 -4EB5 2.9 ISCS2_ARCFU
22 PsiBlast_CBE 86.0434%-100 - C1 -4EB7 3.1 ISCS2_ARCFU
1 PsiBlast_PDB 85.8434% -98 - C1 -4R5F 3.6 ISCS2_ARCFU
37 HHSearch 78.7632% -38 - C1 -1EG5 3.9 ?
8 PsiBlast_PDB 77.4533% -47 - C1 -1EG5 3.9 ?
24 PsiBlast_CBE 77.2333% -46 - C1 -1ECX 3.6 ?
38 HHSearch 77.1234% -13 - C1 -4HVK 3.5 ISCS2_ARCFU
47 HHSearch 76.9032% -23 - C1 -3A9Z 4.0 SCLY_RAT
21 PsiBlast_CBE 76.6534% 7 - C1 -3LVJ 3.9 ISCS_ECO57
26 PsiBlast_CBE 75.8832% -23 - C1 -3GZC - SCLY_HUMAN -
10 PsiBlast_PDB 75.0632% -21 - C1 -3GZC - SCLY_HUMAN -
7 PsiBlast_PDB 74.7933% -48 - C1 -1ECX 3.8 ?
3 PsiBlast_PDB 74.1534% 5 - C1 -3LVK 3.5 ISCS_ECO57
28 PsiBlast_CBE 73.7731% -9 - C1 -3A9Z 2.6 SCLY_RAT
11 PsiBlast_PDB 73.7132% -12 - C1 -3GZD - SCLY_HUMAN -
59 Fugue 73.4629% -17 - C1 -4ISY - ISCSL_MYCTU -
58 Fugue 73.0832% -14 * C1 *1ECX - ? -
2 PsiBlast_PDB 73.0834% 6 - C1 -3LVJ 4.1 ISCS_ECO57
12 PsiBlast_PDB 72.3231% -7 - C1 -3A9X 4.3 SCLY_RAT
30 PsiBlast_CBE 71.9031% -9 - C1 -3A9X 3.8 SCLY_RAT
13 PsiBlast_PDB 71.7931% -9 - C1 -3A9Z 4.0 SCLY_RAT
29 PsiBlast_CBE 71.7431% -8 - C1 -3A9Y 3.2 SCLY_RAT
25 PsiBlast_CBE 68.8132% -25 - C1 -3VAX 3.5 ?
41 HHSearch 67.5532% -12 - C1 -3VAX 3.4 ?
9 PsiBlast_PDB 67.5232% -27 - C1 -3VAX 3.4 ?