@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28110: (2016-07-14 )
MEVKEQLKLKELLFIMKQMPKTFKLIFTLERSLFLKLIRFSIITGILPIVSLYISQELINSLVTIRKEVSIVITIFLTYLGVSFFSELISQISEFYNGKFQLNIGYKLNYKVMKKSSNLALKDFENPEIYDKLERVTKEISYKPYQIIQAIITMTTSFVTLLSSIAFLMSWNPKVSLLLLVIPVISLFYFLKIGQEEFFIHWKRAGKERKSWYISYILTHDFSFKELKLYNLKDYLLNKYWDIKKSFIEQDTKILRKKTLLNLIYEIAVQLVGAVIIFIAIMSAFAGKIMVGNVMSYIRSVSLVQNHSQSIMTSIYSIYNSNLYMNQLYEFLELKEEKSQGHKKPIVEPIHSVVFQNVSFIYPNQGEQTLKHINVSLHKGERVAIVGPNGSGKKTFIKLLTGLYEVHEGDILINGINIKELDMDSYMNQIAALFQDFMKYEMTLKENIGFGQIDKLHQTNKMHEVLDIVRADFLKSHSSYQFDTQLGLWFDEGRQLSGGQWQKIALARAYFREASLYILDEPSSALDPIAEKETFDTFFSLSKDKIGIFISHRLVAAKLADRIIVMDKGEIVGIGTHEELLKTCPLYKKMDESENYMNPLEEEGSKWKEALYQG

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(2IXG)

[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]




15 HHSearch 77.5220% 0 - C- -4F4C - PGP1_CAEEL -
14 HHSearch 76.2221% 0 - C- -4Q9H - MDR1A_MOUSE -
123 Fugue 74.1621%-104 - C2 -3B60 - MSBA_SALTY -
3 HHSearch 72.0020% - - C2 -3B5X - MSBA_VIBCH -
4 HHSearch 68.5224% -43 - C2 -4Q4H - Y288_THEMA -
29 PsiBlast_PDB 68.4724% -24 - C2 -4Q4A - Y288_THEMA -
28 PsiBlast_PDB 68.2424% -25 - C2 -3QF4 - Y288_THEMA -
37 PsiBlast_PDB 67.2723% - - C2 -3B5X - MSBA_VIBCH -
31 PsiBlast_PDB 67.0624% -19 - C2 -4Q4J - Y288_THEMA -
30 PsiBlast_PDB 66.3324% -24 - C2 -4Q4H - Y288_THEMA -
7 HHSearch 65.3122% -17 - C2 -4A82 - Y1866_STAAM -
2 HHSearch 65.1422% -25 - C2 -3B60 - MSBA_SALTY -
10 HHSearch 62.8619% -40 - C2 -4Q4H - ? -
1 HHSearch 61.5923% -46 - C2 -4RY2 - ? -
8 HHSearch 61.5422% -8 - C2 -4MYC - ATM1_YEAST -
5 HHSearch 61.4319% -30 - C2 -4MRS - ATM1_NOVAD -
27 PsiBlast_PDB 60.4726% 16 - C2 -4A82 - Y1866_STAAM -
26 PsiBlast_PDB 59.7226% 17 - C2 -2ONJ - Y1866_STAAM -
25 PsiBlast_PDB 59.3826% 15 - C2 -2HYD - Y1866_STAAM -
34 PsiBlast_PDB 59.1027% -1 - C2 -4MYH - ATM1_YEAST -
45 PsiBlast_CBE 47.6334% -17 - C2 -2IXF 7.6
46 PsiBlast_CBE 45.8134% -16 - C2 -2IXF 7.6 TAP1_RAT
68 PsiBlast_CBE 45.5832% -10 - C2 -2IXG 6.7
57 PsiBlast_CBE 44.3734% -24 - C2 -2IXE 7.4
58 PsiBlast_CBE 44.1834% -15 - C2 -2IXE 7.5 TAP1_RAT
47 PsiBlast_CBE 43.9034% -15 - C2 -2IXF 7.6 TAP1_RAT
64 PsiBlast_CBE 42.8333% -18 - C2 -4K8O 6.3
48 PsiBlast_CBE 42.6734% -15 * C2 *2IXF 7.6 TAP1_RAT
59 PsiBlast_CBE 37.6832% 1 - C2 -4AYX 5.9 ABCBA_HUMAN
60 PsiBlast_CBE 33.2732% -3 - C2 -4AYT 6.5 ABCBA_HUMAN
67 PsiBlast_CBE 31.9531% -11 - C2 -4AYW 5.8 ABCBA_HUMAN