@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28120: (2016-07-14 )
MRSYEKSKTAFKEAQKLMPGGVNSPVRAFKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGYFGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLKQLTPESYKNFIKKGDRLEEGISKTAGAHGIPHTFNRAGSMIGFFFTNEPVINYETAKSSDLKLFASYYKGMANEGVFLPPSQFEGLFLSTAHTDEDIENTIQAAEKVFAEISRR

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PXG_A_3(3FQ7)
GSA_SYNP6
[Raw transfer]




EA5_A_3(2HP1)
GSA_SYNP6
[Raw transfer]




PMP_A_2(3BS8)
GSA_BACSU
[Raw transfer]




KE4_A_3(2HP2)
GSA_SYNP6
[Raw transfer]




PXG_B_4(3FQ7)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2HOZ)
GSA_SYNP6
[Raw transfer]




PMP_E_5(3GSB)
GSA_SYNP6
[Raw transfer]




PMP_B_4(2HOZ)
GSA_SYNP6
[Raw transfer]




PMP_B_5(3FQA)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




PMP_B_4(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_A_3(3FQA)
GSA_SYNP6
[Raw transfer]




IK2_B_5(4AOA)
BFAT_VARPD
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_B_6(2ZSM)
GSA_AERPE
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PMP_C_8(2ZSM)
GSA_AERPE
[Raw transfer]




PMP_C_3(3GSB)
GSA_SYNP6
[Raw transfer]




IK2_A_3(4AOA)
BFAT_VARPD
[Raw transfer]




PLR_A_3(3USF)
GSA_SYNE7
[Raw transfer]




PMP_A_2(2ZSL)
GSA_AERPE
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PLP_B_4(2HP2)
GSA_SYNP6
[Raw transfer]




PLR_B_5(3USF)
GSA_SYNE7
[Raw transfer]




PLR_A_3(2CFB)
GSA_THEEB
[Raw transfer]




PLP_B_4(2GSA)
GSA_SYNP6
[Raw transfer]




PLP_A_3(4GSA)
GSA_SYNP6
[Raw transfer]




PLP_B_4(4GSA)
GSA_SYNP6
[Raw transfer]




PMP_A_4(2ZSM)
GSA_AERPE
[Raw transfer]




PLP_B_4(2HP1)
GSA_SYNP6
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_B_11(2YKY)
?
[Raw transfer]




PLP_A_5(2YKY)
?
[Raw transfer]




PLP_C_21(2YKY)
?
[Raw transfer]




PLP_A_3(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_A_4(2YKU)
?
[Raw transfer]




PLP_C_11(2YKX)
?
[Raw transfer]




PLP_A_4(2YKX)
?
[Raw transfer]




PLP_A_3(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_B_10(2YKU)
?
[Raw transfer]




PLP_B_9(2YKX)
?
[Raw transfer]




PLP_B_4(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_C_17(2YKU)
?
[Raw transfer]




GAB_A_4(3FQA)
GSA_SYNP6
[Raw transfer]




GAB_D_4(3GSB)
GSA_SYNP6
[Raw transfer]




HOZ_A_4(3USF)
GSA_SYNE7
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




HOZ_B_5(2HP1)
GSA_SYNP6
[Raw transfer]




EDO_C_12(2YKX)
?
[Raw transfer]




1 PsiBlast_PDB 98.8799% -84 - C1 -3BS8 3.8 GSA_BACSU
9 PsiBlast_PDB 82.3858% -76 - C1 -2HOZ 4.3 GSA_SYNP6
13 PsiBlast_PDB 80.7858% -69 - C1 -3FQ8 4.9 GSA_SYNP6
6 PsiBlast_PDB 80.7758% -70 - C1 -3FQ7 5.6 GSA_SYNP6
12 PsiBlast_PDB 80.3058% -68 - C1 -3FQA 4.2 GSA_SYNP6
10 PsiBlast_PDB 80.2858% -69 - C1 -2HP1 5.3 GSA_SYNP6
25 PsiBlast_CBE 79.9058% -68 * C1 *3FQ7 5.9 GSA_SYNP6
31 PsiBlast_CBE 79.7858% -69 - C1 -3FQ8 4.0 GSA_SYNP6
4 PsiBlast_PDB 79.7658% -67 - C1 -4GSA 3.1 GSA_SYNP6
125 Fugue 79.6458% -66 - C1 -2GSA 5.1 GSA_SYNP6
23 PsiBlast_CBE 79.4858% -67 - C1 -2GSA 3.5 GSA_SYNP6
7 PsiBlast_PDB 79.4558% -66 - C1 -3USF 4.4 GSA_SYNE7
26 PsiBlast_CBE 79.2358% -66 - C1 -2HP2 3.7 GSA_SYNP6
3 PsiBlast_PDB 79.1658% -67 - C1 -2GSA - GSA_SYNP6 -
11 PsiBlast_PDB 79.1458% -70 - C1 -2HP2 5.1 GSA_SYNP6
30 PsiBlast_CBE 79.1358% -67 - C1 -3FQA 4.2 GSA_SYNP6
21 PsiBlast_CBE 79.0658% -66 - C1 -4GSA 3.2 GSA_SYNP6
5 PsiBlast_PDB 78.8858% -69 - C1 -3GSB 4.3 GSA_SYNP6
14 PsiBlast_PDB 78.7854% -69 - C1 -5I92 - ? -
29 PsiBlast_CBE 78.5758% -78 - C1 -2HOY - GSA_SYNP6 -
28 PsiBlast_CBE 78.5658% -73 - C1 -2HOZ 4.4 GSA_SYNP6
22 PsiBlast_CBE 77.9858% -67 - C1 -3GSB 4.8 GSA_SYNP6
24 PsiBlast_CBE 77.0758% -77 - C1 -3USF 4.3 GSA_SYNE7
27 PsiBlast_CBE 76.2958% -77 - C1 -2HP1 3.0 GSA_SYNP6
120 HHSearch 74.6257% -73 - C1 -3FQ8 4.9 GSA_SYNP6
2 PsiBlast_PDB 73.2060% -87 - C1 -2CFB 2.8 GSA_THEEB
15 PsiBlast_PDB 71.9052% -54 - C1 -2E7U 4.3 GSA_THET8
34 PsiBlast_CBE 71.2144% -80 - C1 -2ZSM 4.0 GSA_AERPE
16 PsiBlast_PDB 70.4244% -77 - C1 -2EPJ 4.8 GSA_AERPE
17 PsiBlast_PDB 70.2244% -77 - C1 -2ZSL 4.8 GSA_AERPE
33 PsiBlast_CBE 70.0544% -77 - C1 -2ZSM 4.2 GSA_AERPE
18 PsiBlast_PDB 70.0244% -74 - C1 -2ZSM 4.3 GSA_AERPE
45 PsiBlast_CBE 64.7831% -65 - C1 -4AO9 3.0 BFAT_VARPD
117 HHSearch 64.2552% -53 - C1 -2E7U 4.3 GSA_THET8
46 PsiBlast_CBE 64.2431% -63 - C1 -4AO9 3.2 BFAT_VARPD
44 PsiBlast_CBE 63.3031% -62 - C1 -4AOA 4.5 BFAT_VARPD
43 PsiBlast_CBE 63.3031% -64 - C1 -4AOA 4.5 BFAT_VARPD
53 PsiBlast_CBE 63.2932% -70 - C1 -2YKX 3.2 ?
50 PsiBlast_CBE 62.7832% -69 - C1 -2YKY 4.4 ?
55 PsiBlast_CBE 62.7532% -71 - C1 -2YKX 3.4 ?
52 PsiBlast_CBE 62.3432% -69 - C1 -2YKY 4.0 ?
54 PsiBlast_CBE 61.6332% -69 - C1 -2YKX 3.1 ?
61 PsiBlast_CBE 61.5932% -69 - C1 -2YKU 3.2 ?
59 PsiBlast_CBE 61.5732% -70 - C1 -2YKU 4.4 ?
51 PsiBlast_CBE 60.9232% -69 - C1 -2YKY 4.3 ?
60 PsiBlast_CBE 60.5632% -68 - C1 -2YKU 3.0 ?
110 HHSearch 59.4531% -62 - C1 -4AO9 3.1 BFAT_VARPD
90 PsiBlast_CBE 27.8732% 3 - C1 -4JF1 3.9 ARGD_SALTY
66 PsiBlast_CBE 27.4535% 10 - C1 -1VEF 2.7 ARGD_THET8