@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28190: (2016-07-14 )
MKVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_B_6(1SVW)
ENGB_BACSU
[Raw transfer]




GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]




GDP_A_3(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_A_3(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]




GDP_B_5(3PQC)
ENGB_THEMA
[Raw transfer]




1 PsiBlast_PDB 88.80100%-129 - C2 -1SUL - ENGB_BACSU -
73 HHSearch 86.96100%-128 - C2 -1SVI 6.7 ENGB_BACSU
2 PsiBlast_PDB 86.96100%-128 - C2 -1SVI 6.7 ENGB_BACSU
21 PsiBlast_CBE 84.19100%-109 - C2 -1SVW 7.5 ENGB_BACSU
22 PsiBlast_CBE 72.2540%-122 - C2 -3PQC 6.9 ENGB_THEMA
3 PsiBlast_PDB 72.0540%-120 - C2 -3PQC 7.7 ENGB_THEMA
74 HHSearch 70.7841%-118 * C2 *3PQC 7.7 ENGB_THEMA
4 PsiBlast_PDB 68.6540%-153 - C2 -3PR1 - ENGB_THEMA -
63 Fugue 60.9733%-111 - C2 -1PUI - ENGB_ECOLI -
75 HHSearch 60.6536%-105 - C2 -1PUI - ENGB_ECOLI -
5 PsiBlast_PDB 57.8638%-106 - C2 -1PUI - ENGB_ECOLI -
23 PsiBlast_CBE 56.5538%-110 - C2 -1PUI - ENGB_ECOLI -
76 HHSearch 52.8532% 6 - C2 -4DHE - ENGB_BURTA -
6 PsiBlast_PDB 49.3332% 18 - C2 -4DHE - ENGB_BURTA -
93 HHSearch 47.7424% -6 - C2 -2WJG - FEOB_METJA -
81 HHSearch 44.8926% 40 - C2 -3IEV - ERA_AQUAE -
78 HHSearch 44.0323% -25 - C2 -1MKY - DER_THEMA -
20 PsiBlast_PDB 43.8525% 10 - C2 -3IEU - ERA_ECOLI -
85 HHSearch 43.1021% -9 - C2 -3B1V - ? -
18 PsiBlast_PDB 42.7125% 9 - C2 -1EGA - ERA_ECOLI -