@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28280: (2016-07-14 )
MRKINFFDTTLRDGEQSPGVNLNTQEKLAIAKQLERLGADIIEAGFPASSRGDFLAVQEIARTIKNCSVTGLARCVKGDIDAAWEALKDGAQPRIHVFIATSDIHLKHKLKMTREQVIERAVGMVKYAKERFPIVQWSAEDACRTELPFLAEIVEKVIDAGASVINLPDTVGYLAPAEYGNIFKYMKENVPNIHKAKLSAHCHDDLGMAVANSLAAIENGADQIECAVNGIGERAGNAALEEIAVALHTRKDFYQVETGITLNEIKRTSDLVSKLTGMAVPRNKAVVGDNAFAHESGIHQDGFLKEKSTYEIISPELVGVTADALVLGKHSGRHAFKDRLTALGFQFDSEEINKFFTMFKELTEKKKEITDEDLVSLILEEKVTDRKIGYEFLSLQVHYGTSQVPTATLSLKNQENAQLIQEAATGAGSVEAIYNTLERCIDKDVELLDYRIQSNRKGEDAFAQVYVRVLVNGKESAGRGIAQDVLEASAKAYLNAVNRQLVFQSNMSGLKNHTAVGS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VPM_A_3(4OV9)
?
[Raw transfer]



KIV_A_3(4OV4)
?
[Raw transfer]



KIV_A_3(4OV4)
?
[Raw transfer]



KIV_A_3(4OV4)
?
[Raw transfer]



PYR_A_3(3BLF)
?
[Raw transfer]



PYR_A_4(3BLI)
?
[Raw transfer]



GOL_A_5(3RMJ)
LEU1_NEIMB
[Raw transfer]



GOL_A_5(3RMJ)
LEU1_NEIMB
[Raw transfer]



COI_A_6(3HPS)
LEU1_MYCTU
[Raw transfer]
1 PsiBlast_PDB 86.4955% -89 - C2 -3RMJ 2.3 LEU1_NEIMB
23 HHSearch 86.3254% -88 - C2 -3RMJ 2.3 LEU1_NEIMB
30 HHSearch 84.5560% -93 - C- -3EWB - LEU1_LISMF -
2 PsiBlast_PDB 84.1459% -93 - C- -3EWB - LEU1_LISMF -
26 HHSearch 82.2455%-109 - C2 -3EEG - ? -
3 PsiBlast_PDB 81.5455%-110 - C2 -3EEG - ? -
4 PsiBlast_PDB 73.6134% -4 - C2 -4OV4 3.3 ?
22 HHSearch 73.4635% 9 - C2 -4OV4 3.3 ?
16 PsiBlast_PDB 72.6224% 2 - C2 -3HPS 3.2 LEU1_MYCTU
17 PsiBlast_PDB 72.5224% 3 - C2 -3FIG - LEU1_MYCTU -
48 Fugue 72.4935% 12 - C2 -4OV4 3.3 ?
5 PsiBlast_PDB 71.1234% 6 - C2 -4OV9 3.7 ?
25 HHSearch 70.5227% -90 - C2 -3IVS - HOSM_SCHPO -
45 Fugue 63.7724% 23 - C2 -1SR9 - LEU1_MYCTU -
9 PsiBlast_PDB 61.2329% -7 - C2 -3A9I - HOSC_THET2 -
19 PsiBlast_PDB 59.4228% -2 - C2 -3HPX - LEU1_MYCTU -
12 PsiBlast_PDB 58.0228% 2 - C2 -3MI3 - HOSM_SCHPO -
11 PsiBlast_PDB 57.5128% 6 - C2 -3IVU - HOSM_SCHPO -
8 PsiBlast_PDB 57.2829% -12 - C2 -2ZYF - HOSC_THET2 -
10 PsiBlast_PDB 56.0928% 5 - C2 -3IVT - HOSM_SCHPO -
14 PsiBlast_PDB 54.0230% 28 - C2 -3BLF 4.1 ?
15 PsiBlast_PDB 52.9530% 29 - C2 -3BLI 2.8 ?