@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28290: (2016-07-14 )
MVKVYYNGDIKENVLAGKTVAVIGYGSQGHAHALNLKESGVDVIVGVRQGKSFTQAQEDGHKVFSVKEAAAQAEIIMVLLPDEQQQKVYEAEIKDELTAGKSLVFAHGFNVHFHQIVPPADVDVFLVAPKGPGHLVRRTYEQGAGVPALFAIYQDVTGEARDKALAYAKGIGGARAGVLETTFKEETETDLFGEQAVLCGGLSALVKAGFETLTEAGYQPELAYFECLHELKLIVDLMYEEGLAGMRYSISDTAQWGDFVSGPRVVDAKVKESMKEVLKDIQNGTFAKEWIVENQVNRPRFNAINASENEHQIEVVGRKLREMMPFVKQGKKKEAVVSVAQN

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_9(4KQW)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NAD_B_10(4KQX)
?
[Raw transfer]



NDP_A_3(4XDZ)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NDP_B_11(4XDZ)
?
[Raw transfer]



NDP_B_9(3FR8)
ILV5_ORYSJ
[Raw transfer]



NAP_A_3(4KQW)
?
[Raw transfer]



NDP_A_3(4XDZ)
?
[Raw transfer]



NDP_A_5(3FR8)
ILV5_ORYSJ
[Raw transfer]



NAI_B_12(4XDY)
?
[Raw transfer]



NAI_A_5(4XDY)
?
[Raw transfer]



NAI_A_5(4XDY)
?
[Raw transfer]



40E_A_5(5E4R)
?
[Raw transfer]



HIO_A_8(4XDY)
?
[Raw transfer]



40E_B_14(4XDZ)
?
[Raw transfer]



HIO_A_4(4KQX)
?
[Raw transfer]



40E_A_6(4XDZ)
?
[Raw transfer]
1 PsiBlast_PDB 82.3369%-114 - C4 -4TSK 9.5 ?
6 PsiBlast_PDB 82.3155% 0 - C- -5E4R - ? -
111 HHSearch 77.1268% -51 - C4 -4TSK 9.5 ?
3 PsiBlast_PDB 73.0455% -53 - C4 -1NP3 - ILVC_PSEAE -
128 Fugue 73.0356% -53 - C4 -1NP3 - ILVC_PSEAE -
4 PsiBlast_PDB 71.7855% -49 - C4 -4KQW - ? -
22 PsiBlast_CBE 71.7756% -47 - C4 -4XIY - ILVC_AZOVD -
21 PsiBlast_CBE 71.3156% -50 - C4 -4XIY - ILVC_AZOVD -
115 HHSearch 71.2454% -48 - C4 -4KQW 7.4 ?
25 PsiBlast_CBE 70.9655% -48 - C4 -4KQX 7.2 ?
9 PsiBlast_PDB 70.8353% -34 - C4 -4YPO - ? -
24 PsiBlast_CBE 70.7855% -49 - C4 -4KQW 9.8 ?
27 PsiBlast_CBE 70.7553% -37 - C4 -4YPO - ? -
5 PsiBlast_PDB 70.7355% -47 - C4 -4KQX - ? -
112 HHSearch 70.5153% -34 - C4 -4YPO - ? -
23 PsiBlast_CBE 69.9656% -47 - C4 -4XIY - ILVC_AZOVD -
26 PsiBlast_CBE 69.5355% -49 - C4 -4XDZ 11.0 ?
110 HHSearch 69.5156% -17 - C4 -1NP3 - ILVC_PSEAE -
7 PsiBlast_PDB 69.2655% -49 - C4 -4XDZ 10.9 ?
113 HHSearch 69.1454% -50 - C4 -4XDZ 7.3 ?
107 HHSearch 61.6551% -53 - C4 -5E4R Error ?
10 PsiBlast_PDB 59.2947% 27 - C4 -4XDY 5.8 ?
28 PsiBlast_CBE 59.2447% 26 - C4 -4XDY 5.7 ?
108 HHSearch 58.9747% 26 - C4 -4XDY 5.6 ?
14 PsiBlast_PDB 42.9234% 22 - C4 -3FR8 3.3 ILV5_ORYSJ
31 PsiBlast_CBE 42.6334% 24 - C4 -3FR8 4.8 ILV5_ORYSJ