@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28360: (2016-07-15 )
MIIMKEAIIATHNPGKVKEFKEILEPRGYDVKSLAEIGFTEEIEETGHTFEENAIMKAEAVAKAVNKMVIADDSGLSIDNLGGRPGVYSARYAGEQKDDQANIEKVLSELKGIEKEQRTARFRCALAVSIPGEETKTVEGHVEGYIAEEPRGEYGFGYDPIFIVKDKDKTMAELTSDEKNKISHRADALKKLSKLLEA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ITT_A_11(2Q16)
RDGB_ECOLI
[Raw transfer]



IMP_D_11(3S86)
NTPA_THEMA
[Raw transfer]



ITT_A_3(2DVO)
NTPA_PYRHO
[Raw transfer]



ITT_A_5(2E5X)
NTPA_PYRHO
[Raw transfer]



IMP_B_7(3S86)
NTPA_THEMA
[Raw transfer]



IMP_C_9(3S86)
NTPA_THEMA
[Raw transfer]



IMP_A_5(3S86)
NTPA_THEMA
[Raw transfer]



IMP_A_16(2DVN)
NTPA_PYRHO
[Raw transfer]



IMP_B_17(2DVN)
NTPA_PYRHO
[Raw transfer]



IMP_A_2(2PYU)
RDGB_ECOLI
[Raw transfer]



GOL_B_19(2DVN)
NTPA_PYRHO
[Raw transfer]



ANP_C_3(2MJP)
NTPA_METJA
[Raw transfer]
21 PsiBlast_CBE 95.5352% -72 - C2 -4BNQ - NTPA_STAAN -
1 PsiBlast_PDB 91.3952% -47 - C2 -4BNQ - NTPA_STAAN -
2 PsiBlast_PDB 86.4947% -41 - C2 -2PYU 5.1 RDGB_ECOLI
4 PsiBlast_PDB 85.7446% -28 - C2 -2Q16 8.4 RDGB_ECOLI
3 PsiBlast_PDB 85.5347% -34 - C- -1K7K - RDGB_ECOLI -
37 HHSearch 83.8743% -22 - C2 -3TQU - NTPA_COXBU -
41 HHSearch 82.6436% -72 * C2 *1V7R - NTPA_PYRHO -
39 HHSearch 81.8952% 14 - C2 -4BNQ - NTPA_STAAN -
5 PsiBlast_PDB 79.0944% 4 - C2 -3TQU - NTPA_COXBU -
26 PsiBlast_CBE 78.8934% -71 - C2 -2DVN 6.0 NTPA_PYRHO
9 PsiBlast_PDB 78.2934% -58 - C2 -2DVN 6.6 NTPA_PYRHO
8 PsiBlast_PDB 77.9534% -57 - C2 -1V7R - NTPA_PYRHO -
27 Fugue 77.5135% -49 - C2 -1B78 - NTPA_METJA -
11 PsiBlast_PDB 76.9934% -57 - C2 -2DVP - NTPA_PYRHO -
10 PsiBlast_PDB 76.7834% -55 - C2 -2DVO 7.8 NTPA_PYRHO
43 HHSearch 76.7442% 19 - C2 -1VP2 - NTPA_THEMA -
13 PsiBlast_PDB 76.6534% -60 - C2 -2E5X 7.0 NTPA_PYRHO
15 PsiBlast_PDB 75.8835% -41 - C2 -1B78 - NTPA_METJA -
14 PsiBlast_PDB 75.7335% -45 - C2 -2MJP 6.1 NTPA_METJA
22 PsiBlast_CBE 75.3443% -12 - C2 -3S86 6.3 NTPA_THEMA
7 PsiBlast_PDB 73.9743% -7 - C2 -3S86 6.4 NTPA_THEMA
24 PsiBlast_CBE 73.8743% -12 - C2 -3S86 6.3 NTPA_THEMA
23 PsiBlast_CBE 72.9143% -3 - C2 -3S86 6.4 NTPA_THEMA