@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28370: (2016-07-15 )
MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDSLPELK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(2PO0)
RRP41_PYRAB
[Raw transfer]




CDP_A_3(2PO2)
RRP41_PYRAB
[Raw transfer]




UDP_A_3(2PNZ)
RRP41_PYRAB
[Raw transfer]




CHAIN_C_1(2PO1)
RRP41_PYRAB
[Raw transfer]

-

2 PsiBlast_PDB 86.68100%-106 - C1 -1OYR - RNPH_BACSU -
25 PsiBlast_CBE 86.62100%-106 - C1 -1OYR - RNPH_BACSU -
24 PsiBlast_CBE 86.36100%-105 - C1 -1OYR - RNPH_BACSU -
22 PsiBlast_CBE 85.21100%-106 - C1 -1OYR - RNPH_BACSU -
21 PsiBlast_CBE 85.11100%-106 - C1 -1OYR - RNPH_BACSU -
23 PsiBlast_CBE 85.08100%-106 - C1 -1OYR - RNPH_BACSU -
1 PsiBlast_PDB 84.16100%-117 - C1 -1OYP - RNPH_BACSU -
28 PsiBlast_CBE 83.76100%-117 - C1 -1OYP - RNPH_BACSU -
27 PsiBlast_CBE 83.75100%-117 - C1 -1OYP - RNPH_BACSU -
30 PsiBlast_CBE 83.66100%-117 - C1 -1OYP - RNPH_BACSU -
29 PsiBlast_CBE 83.29100%-117 - C1 -1OYP - RNPH_BACSU -
26 PsiBlast_CBE 83.26100%-117 - C1 -1OYP - RNPH_BACSU -
3 PsiBlast_PDB 83.0198%-122 - C1 -1OYS - RNPH_BACSU -
87 HHSearch 79.4470%-111 - C1 -3DD6 - RNPH_BACAN -
4 PsiBlast_PDB 78.8769%-110 - C1 -3DD6 - RNPH_BACAN -
85 HHSearch 75.3998% -61 - C1 -1OYS - RNPH_BACSU -
6 PsiBlast_PDB 73.3063%-105 - C1 -1UDQ - RNPH_AQUAE -
86 HHSearch 72.7562%-104 - C1 -1UDN - RNPH_AQUAE -
7 PsiBlast_PDB 72.7363%-103 - C1 -1UDO - RNPH_AQUAE -
5 PsiBlast_PDB 72.6163%-106 - C1 -1UDN - RNPH_AQUAE -
14 PsiBlast_PDB 50.8431% -5 - C1 -2PO1 7.7 RRP41_PYRAB
15 PsiBlast_PDB 49.7431% -2 - C1 -2PO2 4.3 RRP41_PYRAB
13 PsiBlast_PDB 47.7531% -5 - C1 -2PO0 5.4 RRP41_PYRAB
12 PsiBlast_PDB 47.7231% -6 - C1 -2PNZ 4.6 RRP41_PYRAB