@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28440: (2016-07-15 )
MSQSSIIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEHFDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTAYAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIESFRSDAVIMATGGPGIIFGKSTNSMINTGSAASIVYQQGAYYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVNQKLGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKLPMKIFPAVHYSMGGLWVDYDQMTNIPGLFAAGECDYSMHGGNRLGANSLLSAIYGGMVAGPNAVKYVNGLESSAEDMSSSLFDAHVKKEEEKWADIMSMDGTENAYVLHKELGEWMTANVTVVRHNDKLLKTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNMLQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLKTTMAKHVSPYEAPEFEYQDVDVSLITPRKRDYSKKKVAK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_8(1NEN)
SDHA_ECOLI
[Raw transfer]




FAD_A_8(1NEK)
SDHA_ECOLI
[Raw transfer]




FAD_A_6(2ACZ)
SDHA_ECOLI
[Raw transfer]




66 HHSearch 97.7535% 0 - C- -1KF6 - FRDA_ECOLI -
24 PsiBlast_CBE 92.4833% 0 - C- -1KF6 - FRDA_ECOLI -
2 PsiBlast_PDB 92.4833% 0 - C- -1KF6 - FRDA_ECOLI -
65 HHSearch 89.0931% 0 - C- -2H88 - SDHA_CHICK -
85 Fugue 75.1134% 16 - C2 -1L0V - FRDA_ECOLI -
64 HHSearch 74.9632% 10 - C2 -2WDQ - SDHA_ECOLI -
5 PsiBlast_PDB 72.8631% 19 - C2 -1QLB - FRDA_WOLSU -
26 PsiBlast_CBE 72.8131% 19 - C2 -1QLB - FRDA_WOLSU -
84 Fugue 72.2631% 22 - C2 -1E7P - FRDA_WOLSU -
14 PsiBlast_PDB 71.9830% 21 - C2 -2BS2 - FRDA_WOLSU -
12 PsiBlast_PDB 71.9030% 22 - C2 -2BS3 - FRDA_WOLSU -
69 HHSearch 71.8828% -66 - C2 -2E5V - NADB_SULTO -
13 PsiBlast_PDB 71.5930% 22 - C2 -2BS4 - FRDA_WOLSU -
11 PsiBlast_PDB 70.5230% 26 - C2 -1E7P - FRDA_WOLSU -
63 HHSearch 69.9432% 25 * C2 *2BS2 - FRDA_WOLSU -
31 PsiBlast_CBE 69.6133% 11 - C2 -3P4P - FRDA_ECOLI -
10 PsiBlast_PDB 69.5033% 13 - C2 -4KX6 - FRDA_ECOLI -
7 PsiBlast_PDB 69.4233% 10 - C2 -3P4P - FRDA_ECOLI -
4 PsiBlast_PDB 69.4133% 12 - C2 -1L0V - FRDA_ECOLI -
28 PsiBlast_CBE 69.3533% 13 - C2 -3P4S - FRDA_ECOLI -
15 PsiBlast_PDB 66.1631% 24 - C2 -1NEK 9.7 SDHA_ECOLI
16 PsiBlast_PDB 65.8331% 24 - C2 -1NEN 8.6 SDHA_ECOLI
17 PsiBlast_PDB 65.4031% 22 - C2 -2ACZ 9.6 SDHA_ECOLI