@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu28950: (2016-07-16 )
MSDMVKITFPDGAVKEFAKGTTTEDIAASISPGLKKKSLAGKLNGKEIDLRTPINEDGTVEIITEGSEEGLQIMRHSAAHLLAQAIKRIYKDVKFGVGPVIENGFYYDVEMDEAITPEDLPKIEKEMKKIVNANLPIVRKEVSREEAKARFAEIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVPSTGKIKEFKLLSLAGAYWRGDSKNQMLQRVYGTAFFKKADLEEHLRMLEEAKERDHRKLGKELKLFANSQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGYEHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYRELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVRLIQDVYEDFGLSDYTFRLSYRDPEDTEKYFDDDEMWNKAQSMLKEAMDEIGHDYYEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLDFLLPERFDLTYIGEDGKQHRPVVIHRGVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSPAVHLDYAKKVQERLQCEGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQNSETISLDEFVKKAVAEAKK

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSB_A_6(4YYE)
SYTM_YEAST
[Raw transfer]




TSB_B_11(4YYE)
SYTM_YEAST
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]




409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]




SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]




1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]




X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]




X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]




1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]




THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]




61 HHSearch 84.6772% -23 - C1 -1NYR - SYT_STAAW -
2 PsiBlast_PDB 84.6771% -28 - C1 -1NYR - SYT_STAAW -
1 PsiBlast_PDB 84.5271% -25 - C1 -1NYQ - SYT_STAAW -
22 PsiBlast_CBE 83.1671% -28 - C1 -1NYQ - SYT_STAAW -
21 PsiBlast_CBE 81.2571% -26 - C1 -1NYR - SYT_STAAW -
3 PsiBlast_PDB 76.2042% -28 - C2 -1QF6 - SYT_ECOLI -
60 HHSearch 75.6442% -29 - C2 -1QF6 - SYT_ECOLI -
37 PsiBlast_CBE 63.9440% -97 - C1 -1EVL - SYT_ECOLI -
10 PsiBlast_PDB 63.7840%-100 - C1 -1FYF 5.9 SYT_ECOLI
36 PsiBlast_CBE 63.5940% -98 - C1 -1EVL - SYT_ECOLI -
34 PsiBlast_CBE 63.5140%-100 - C1 -1FYF 6.4 SYT_ECOLI
38 PsiBlast_CBE 63.4840% -99 - C1 -1EVK 3.2 SYT_ECOLI
9 PsiBlast_PDB 63.4240%-100 - C1 -1EVL - SYT_ECOLI -
5 PsiBlast_PDB 63.3540% -96 - C1 -4HWP 4.6 SYT_ECOLI
35 PsiBlast_CBE 63.1740% -98 - C1 -1EVL - SYT_ECOLI -
4 PsiBlast_PDB 63.1740% -96 - C1 -4HWO 6.6 SYT_ECOLI
6 PsiBlast_PDB 63.1240% -98 - C1 -4HWR 5.2 SYT_ECOLI
7 PsiBlast_PDB 62.9940% -98 - C1 -4HWS 4.7 SYT_ECOLI
8 PsiBlast_PDB 62.9140% -95 - C1 -1EVK - SYT_ECOLI -
26 PsiBlast_CBE 62.8040% -97 - C1 -4HWO 6.6 SYT_ECOLI
12 PsiBlast_PDB 62.6940% -98 - C1 -4P3O 8.5 SYT_ECOLI
23 PsiBlast_CBE 62.6440% -97 - C1 -4HWS 5.3 SYT_ECOLI
25 PsiBlast_CBE 62.5840% -96 - C1 -4HWP 5.9 SYT_ECOLI
40 PsiBlast_CBE 62.4940% -93 - C1 -4P3O 8.6 SYT_ECOLI
13 PsiBlast_PDB 62.4140% -98 - C1 -4P3P 9.0 SYT_ECOLI
24 PsiBlast_CBE 62.2040% -98 - C1 -4HWR 5.2 SYT_ECOLI
39 PsiBlast_CBE 62.1640% -98 - C1 -4P3P 8.8 SYT_ECOLI
14 PsiBlast_PDB 59.6539% -94 - C1 -4HWT 3.8 SYTC_HUMAN
41 PsiBlast_CBE 58.3439% -64 - C1 -4HWT 5.3 SYTC_HUMAN
65 HHSearch 58.3039% -68 - C1 -4HWT 3.8 SYTC_HUMAN
62 HHSearch 53.0136% 25 - C1 -3UH0 4.6 SYTM_YEAST
19 PsiBlast_PDB 51.4534% 25 - C1 -3UH0 5.1 SYTM_YEAST
48 PsiBlast_CBE 51.0934% 22 - C1 -4YYE 5.2 SYTM_YEAST
20 PsiBlast_PDB 51.0934% 26 - C1 -4YYE 5.5 SYTM_YEAST