@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29020: (2016-07-16 )
MKVKVAINGFGRIGRMVFRKAMLDDQIQVVAINASYSAETLAHLIKYDTIHGRYDKEVVAGEDSLIVNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAKKVILTAPGKNEDVTIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQKNIDNPHKDLRRARACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMKHPSAV

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(4BOY)
?
[Raw transfer]



NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_A_3(4LSM)
?
[Raw transfer]



NAD_B_4(3L0D)
?
[Raw transfer]



NAD_B_4(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_E_5(1VC2)
?
[Raw transfer]



NAD_A_3(3L0D)
?
[Raw transfer]



NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]



NAD_A_3(3CPS)
?
[Raw transfer]



NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]



NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]



CHAIN_C_3(3B1K)
?
[Raw transfer]
-
CHAIN_D_4(3B1J)
?
[Raw transfer]
-
CHAIN_J_8(3B1K)
?
[Raw transfer]
-
CHAIN_C_3(3B1J)
?
[Raw transfer]
-
CHAIN_I_7(3B1K)
?
[Raw transfer]
-
CHAIN_D_4(3B1K)
?
[Raw transfer]
-
117 HHSearch 97.9173%-125 - C1 -4DIB - ? -
1 PsiBlast_PDB 92.5174%-119 - C1 -4DIB - ? -
24 PsiBlast_CBE 92.0274%-122 - C1 -4DIB - ? -
36 PsiBlast_CBE 91.3761%-104 - C1 -4DBV - G3P_GEOSE -
33 PsiBlast_CBE 91.2161%-107 - C1 -1GD1 - G3P_GEOSE -
8 PsiBlast_PDB 91.2061%-108 - C1 -2DBV - G3P_GEOSE -
7 PsiBlast_PDB 91.0861%-106 - C1 -1DBV - G3P_GEOSE -
37 PsiBlast_CBE 91.0161%-105 - C1 -3DBV - G3P_GEOSE -
45 PsiBlast_CBE 90.9861%-104 - C1 -1DBV - G3P_GEOSE -
57 PsiBlast_CBE 90.8761%-101 - C1 -1NQ5 - G3P_GEOSE -
41 PsiBlast_CBE 90.8661%-107 - C1 -2DBV - G3P_GEOSE -
49 PsiBlast_CBE 90.4661%-102 - C1 -1NPT - G3P_GEOSE -
42 PsiBlast_CBE 90.4161%-107 - C1 -2DBV - G3P_GEOSE -
118 HHSearch 90.3962%-100 * C1 *3CMC - G3P_GEOSE -
26 PsiBlast_CBE 90.3461%-102 - C1 -3CMC - G3P_GEOSE -
34 PsiBlast_CBE 90.3361%-102 - C1 -4DBV - G3P_GEOSE -
35 PsiBlast_CBE 90.2961%-102 - C1 -4DBV - G3P_GEOSE -
39 PsiBlast_CBE 90.1061%-105 - C1 -3DBV - G3P_GEOSE -
5 PsiBlast_PDB 90.0461%-105 - C1 -3DBV - G3P_GEOSE -
44 PsiBlast_CBE 90.0161%-105 - C1 -1DBV - G3P_GEOSE -
18 PsiBlast_PDB 86.2954%-103 - C1 -1VC2 8.3 ?
13 PsiBlast_PDB 84.2253% -83 - C1 -2EP7 8.8 G3P_AQUAE
58 PsiBlast_CBE 84.2053% -82 - C1 -2EP7 9.0 G3P_AQUAE
114 HHSearch 84.1155% -79 - C1 -2EP7 8.8 G3P_AQUAE
113 HHSearch 79.9448% -65 - C1 -4LSM 8.8 ?
110 HHSearch 77.1246% -24 - C1 -3CPS 8.5 ?
103 HHSearch 76.7754% 2 - C1 -1RM4 7.8 G3PA_SPIOL
20 PsiBlast_PDB 76.6454% -13 - C1 -3B1J 1.2 ?
82 PsiBlast_CBE 75.7454% -20 - C1 -3B1K 1.6 ?
83 PsiBlast_CBE 75.1254% -18 - C1 -3B1K 4.7 ?
116 HHSearch 74.9551% 4 - C1 -4BOY 8.7 ?
80 PsiBlast_CBE 74.1254% -14 - C1 -3B1K 5.4 ?
119 HHSearch 73.9845% -12 - C1 -3H9E 8.6 G3PT_HUMAN
66 PsiBlast_CBE 73.9152% -14 - C1 -3L0D 6.9 ?
108 HHSearch 73.5353% 4 - C1 -1HDG 9.2 G3P_THEMA
17 PsiBlast_PDB 73.2652% -12 - C1 -3L0D 7.6 ?
84 PsiBlast_CBE 73.1654% -9 - C1 -3B1J 1.1 ?
111 HHSearch 72.7049% -0 - C1 -3PYM 8.7 G3P3_YEAST
81 PsiBlast_CBE 70.0054% -10 - C1 -3B1K 1.3 ?
15 PsiBlast_PDB 69.4553% 11 - C1 -1HDG 9.2 G3P_THEMA
62 PsiBlast_CBE 69.3953% 6 - C1 -1HDG 9.5 G3P_THEMA