@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29100: (2016-07-16 )
MNKYRVRLFSVFVVCMILVFCVLGLFLQQLFETSDQRKAEEHIEKEAKYLASLLDAGNLNNQANEKIIKDAGGALDVSASVIDTDGKVLYGSNGRSADSQKVQALVSGHEGILSTTDNKLYYGLSLRSEGEKTGYVLLSASEKSDGLKGELWGMLTASLCTAFIVIVYFYSSMTSRYKRSIESATNVATELSKGNYDARTYGGYIRRSDKLGHAMNSLAIDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPIMGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTLKRAAEKSA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3SL2)

[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_5(4BIY)
CPXA_ECOLI
[Raw transfer]



ADP_C_8(4BIY)
CPXA_ECOLI
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]



ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]
57 HHSearch 71.7028% -33 - C2 -4I5S - ? -
16 PsiBlast_PDB 67.1628% 6 - C2 -3A0R - ? -
1 PsiBlast_PDB 66.30100% -79 * C4 *3CWF - PHOR_BACSU -
66 HHSearch 66.0933% -86 - C2 -4Q20 - DIVL_CAUCR -
48 Fugue 65.9030% 34 - C2 -4I5S - ? -
55 Fugue 64.6598% -73 - C4 -3CWF - PHOR_BACSU -
4 PsiBlast_PDB 63.8836% 18 - C2 -4U7O - ? -
61 HHSearch 62.7034% 25 - C2 -4U7O 9.3 ?
58 HHSearch 62.6128% 7 - C2 -3A0R - ? -
3 PsiBlast_PDB 62.6136% -27 - C2 -4U7N - ? -
22 PsiBlast_CBE 60.9837% 46 - C2 -4JAV - ? -
60 HHSearch 60.8430% -96 - C2 -4BIX 5.4 CPXA_ECOLI
7 PsiBlast_PDB 60.6337% 51 - C2 -4JAV - ? -
2 PsiBlast_PDB 60.5233% 32 - C2 -4I5S - ? -
23 PsiBlast_CBE 60.4237% 31 - C2 -3DGE - ? -
6 PsiBlast_PDB 59.9437% 26 - C2 -3DGE - ? -
5 PsiBlast_PDB 58.3437% 36 - C2 -2C2A - ? -
8 PsiBlast_PDB 57.8937% 38 - C2 -4JAS - ? -
9 PsiBlast_PDB 57.3637% 31 - C2 -4JAU - ? -
21 PsiBlast_CBE 55.5836% 30 - C2 -4U7O 9.4 ?
78 HHSearch 54.5140% -55 * C2 *3SL2 7.8
29 PsiBlast_CBE 54.2836% -35 - C2 -4BIY 5.8 CPXA_ECOLI
67 HHSearch 54.0036% 62 - C2 -2C2A 8.3 ?
13 PsiBlast_PDB 53.2936% -34 - C2 -4BIX 5.1 CPXA_ECOLI
14 PsiBlast_PDB 53.0136% -39 - C2 -4BIY 6.1 CPXA_ECOLI