@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29120: (2016-07-16 )
MGNTRKKVSVIGAGFTGATTAFLIAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDAKITGTSNYEDTAGSDIVVITAGIARKPGMSRDDLVSTNEKIMRSVTQEIVKYSPDSIIVVLTNPVDAMTYAVYKESGFPKERVIGQSGVLDTARFRTFVAEELNLSVKDVTGFVLGGHGDDMVPLVRYSYAGGIPLETLIPKERIDAIVERTRKGGGEIVNLLGNGSAYYAPAASLTEMVEAILKDQRRVLPTIAYLEGEYGYEGIYLGVPTIVGGNGLEQIIELELTDYERAQLNKSVESVKNVMKVLS

Atome Classification :

(67 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_C_9(4PLW)
?
[Raw transfer]




NAI_B_5(4PLT)
?
[Raw transfer]




NAI_C_9(4PLT)
?
[Raw transfer]




NAI_D_11(4PLV)
?
[Raw transfer]




NAI_A_7(4PLT)
?
[Raw transfer]




NAI_D_11(4PLW)
?
[Raw transfer]




NAI_D_11(4PLT)
?
[Raw transfer]




NAD_D_8(1GUZ)
MDH_CHLP8
[Raw transfer]




NAD_A_3(1GUY)
MDH_CHLAA
[Raw transfer]




NAD_A_3(1T2D)
LDH_PLAFD
[Raw transfer]




NAD_A_3(1UXJ)
MDH_CHLAA
[Raw transfer]




NAI_B_7(4PLV)
?
[Raw transfer]




NAI_C_9(4PLV)
?
[Raw transfer]




NAD_B_9(1UXG)
MDH_CHLAA
[Raw transfer]




NAI_A_7(4PLH)
?
[Raw transfer]




NAD_C_11(1UXJ)
MDH_CHLAA
[Raw transfer]




NAI_E_5(1T25)
LDH_PLAFD
[Raw transfer]




NAD_B_5(3CZM)
LDH_TOXGO
[Raw transfer]




NAD_B_9(1UXH)
MDH_CHLAA
[Raw transfer]




NAD_E_5(1T24)
LDH_PLAFD
[Raw transfer]




NAI_A_5(4PLW)
?
[Raw transfer]




NAD_B_5(1UXI)
MDH_CHLAA
[Raw transfer]




NAD_B_6(1GUZ)
MDH_CHLP8
[Raw transfer]




NAD_K_11(1SOW)
LDH_TOXGO
[Raw transfer]




NAD_A_3(1UXK)
MDH_CHLAA
[Raw transfer]




A3D_I_9(1PZG)
?
[Raw transfer]




NAD_D_8(3GVH)
MDH_BRUA2
[Raw transfer]




NAD_A_3(3CZM)
LDH_TOXGO
[Raw transfer]




NAI_B_7(4PLW)
?
[Raw transfer]




NAD_C_7(1GUZ)
MDH_CHLP8
[Raw transfer]




NAI_A_2(1T26)
LDH_PLAFD
[Raw transfer]




NAD_A_5(1UXH)
MDH_CHLAA
[Raw transfer]




NAI_A_2(1T2C)
LDH_PLAFD
[Raw transfer]




NAI_A_3(4PLZ)
LDH_PLAFD
[Raw transfer]




NAD_I_9(1SOW)
LDH_TOXGO
[Raw transfer]




A3D_A_3(4ND2)
?
[Raw transfer]




NAD_A_2(1U5C)
LDH_PLAFD
[Raw transfer]




NAD_A_5(3GVH)
MDH_BRUA2
[Raw transfer]




NAD_B_6(3GVH)
MDH_BRUA2
[Raw transfer]




AP0_E_5(2A94)
LDH_PLAFD
[Raw transfer]




NAD_A_3(1UR5)
MDH_CHLAA
[Raw transfer]




NAD_C_7(1GUY)
MDH_CHLAA
[Raw transfer]




NAD_A_5(1GV0)
MDH_CHLTE
[Raw transfer]




NAD_A_5(1GUZ)
MDH_CHLP8
[Raw transfer]




NAD_A_5(1GUZ)
MDH_CHLP8
[Raw transfer]




NAI_A_11(4PLG)
?
[Raw transfer]




FUM_A_4(1UXI)
MDH_CHLAA
[Raw transfer]




FMR_A_7(1UXH)
MDH_CHLAA
[Raw transfer]




FMR_B_11(1UXG)
MDH_CHLAA
[Raw transfer]




NAD_C_7(3GVH)
MDH_BRUA2
[Raw transfer]




FUM_B_6(1UXI)
MDH_CHLAA
[Raw transfer]




NAI_C_11(4PLH)
?
[Raw transfer]




NAI_B_9(4PLH)
?
[Raw transfer]




NAD_A_5(1UXG)
MDH_CHLAA
[Raw transfer]




NAD_C_9(1UR5)
MDH_CHLAA
[Raw transfer]




BCN_B_11(4B7U)
?
[Raw transfer]




NAI_D_14(4PLH)
?
[Raw transfer]




BCN_A_6(4B7U)
?
[Raw transfer]




NAD_B_7(1GV0)
MDH_CHLTE
[Raw transfer]




BCN_D_17(4B7U)
?
[Raw transfer]




NAD_C_16(1UXK)
MDH_CHLAA
[Raw transfer]




NAI_A_5(4PLV)
?
[Raw transfer]




BCN_C_15(4B7U)
?
[Raw transfer]




2OP_A_6(4PLV)
?
[Raw transfer]




NAD_A_3(1UXI)
MDH_CHLAA
[Raw transfer]




2OP_D_12(4PLV)
?
[Raw transfer]




APR_A_5(4ROS)
MDH_METEP
[Raw transfer]




BIK_A_3(1U5C)
LDH_PLAFD
[Raw transfer]




EDO_A_4(3TL2)
MDH_BACAN
[Raw transfer]




PEG_A_11(4CL3)
MDH_CHLAA
[Raw transfer]




EDO_A_4(3TL2)
MDH_BACAN
[Raw transfer]




BCN_D_19(4B7U)
?
[Raw transfer]




PEG_A_13(4CL3)
MDH_CHLAA
[Raw transfer]




PEG_A_13(4CL3)
MDH_CHLAA
[Raw transfer]




PEG_D_23(4CL3)
MDH_CHLAA
[Raw transfer]




MPD_A_6(4M1Q)
?
[Raw transfer]




1 PsiBlast_PDB 97.2085%-121 - C5 -3TL2 2.2 MDH_BACAN
11 PsiBlast_PDB 89.0156%-129 - C5 -4CL3 1.9 MDH_CHLAA
32 PsiBlast_CBE 88.6656%-133 - C5 -4CL3 2.9 MDH_CHLAA
33 PsiBlast_CBE 87.6656%-121 - C5 -1UXG 10.6 MDH_CHLAA
10 PsiBlast_PDB 87.5956%-122 - C5 -1UXG 11.2 MDH_CHLAA
31 PsiBlast_CBE 87.5156%-119 - C5 -1UXH 11.1 MDH_CHLAA
7 PsiBlast_PDB 87.4456%-120 - C5 -1UXH 11.0 MDH_CHLAA
6 PsiBlast_PDB 87.4356%-134 - C5 -1UR5 8.3 MDH_CHLAA
4 PsiBlast_PDB 86.7956%-120 - C5 -1UXI 10.3 MDH_CHLAA
34 PsiBlast_CBE 86.6456%-133 - C5 -1GUY 9.0 MDH_CHLAA
27 PsiBlast_CBE 86.5956%-133 - C5 -1UXJ 10.4 MDH_CHLAA
28 PsiBlast_CBE 86.4856%-119 - C5 -1UXI 10.0 MDH_CHLAA
30 PsiBlast_CBE 86.3956%-132 - C5 -1UXK 10.0 MDH_CHLAA
29 PsiBlast_CBE 86.3556%-136 - C5 -1UR5 8.4 MDH_CHLAA
5 PsiBlast_PDB 85.8156%-131 - C5 -1UXJ 10.9 MDH_CHLAA
9 PsiBlast_PDB 85.7756%-137 - C5 -1GUY 8.9 MDH_CHLAA
8 PsiBlast_PDB 85.3156%-134 - C5 -1UXK 11.0 MDH_CHLAA
113 HHSearch 83.0283% 6 - C5 -3TL2 2.2 MDH_BACAN
24 PsiBlast_CBE 80.5058% -77 - C5 -4PLH 9.7 ?
2 PsiBlast_PDB 80.4358% -77 - C5 -4PLH 9.9 ?
26 PsiBlast_CBE 80.3058% -73 - C5 -4PLH 10.3 ?
23 PsiBlast_CBE 80.0558% -73 - C5 -4PLW 9.9 ?
111 HHSearch 79.7356% -44 * C5 *4CL3 1.9 MDH_CHLAA
20 PsiBlast_PDB 79.6952% -77 - C5 -3GVH 6.7 MDH_BRUA2
3 PsiBlast_PDB 79.6058% -69 - C5 -4PLW 10.4 ?
21 PsiBlast_CBE 79.5458% -78 - C5 -4PLW 9.9 ?
19 PsiBlast_PDB 79.3654% -69 - C5 -4ROS 6.4 MDH_METEP
22 PsiBlast_CBE 79.0458% -69 - C5 -4PLW 10.5 ?
13 PsiBlast_PDB 78.9756% -77 - C5 -4PLV 10.0 ?
42 PsiBlast_CBE 78.8556% -76 - C5 -4PLV 9.1 ?
59 PsiBlast_CBE 78.4152% -74 - C5 -3GVH 7.8 MDH_BRUA2
61 PsiBlast_CBE 78.2052% -74 - C5 -3GVH 5.9 MDH_BRUA2
60 PsiBlast_CBE 77.7052% -75 - C5 -3GVH 6.7 MDH_BRUA2
25 PsiBlast_CBE 77.3658% -76 - C5 -4PLH 9.8 ?
65 PsiBlast_CBE 76.3453% -52 - C5 -1GUZ 8.0 MDH_CHLP8 (first)
114 HHSearch 76.2753% -52 - C5 -1GUZ 6.7 MDH_CHLP8 (first)
63 PsiBlast_CBE 76.1454% -50 - C5 -1GV0 5.7 MDH_CHLTE
62 PsiBlast_CBE 75.8354% -61 - C5 -1GV0 5.9 MDH_CHLTE
67 PsiBlast_CBE 75.4653% -53 - C5 -1GUZ 6.7 MDH_CHLP8 (first)
64 PsiBlast_CBE 75.3553% -59 - C5 -1GUZ 6.2 MDH_CHLP8 (first)
12 PsiBlast_PDB 74.8856% -17 - C5 -4PLT 10.6 ?
66 PsiBlast_CBE 74.6553% -56 - C5 -1GUZ 7.0 MDH_CHLP8 (first)
43 PsiBlast_CBE 74.5456% -18 - C5 -4PLV 9.2 ?
46 PsiBlast_CBE 74.3956% -18 - C5 -4PLT 10.5 ?
47 PsiBlast_CBE 74.3456% -20 - C5 -4PLT 10.4 ?
44 PsiBlast_CBE 73.9756% -16 - C5 -4PLV 10.2 ?
73 PsiBlast_CBE 73.8245% -32 - C5 -3CZM 9.9 LDH_TOXGO
75 PsiBlast_CBE 73.6045% -34 - C5 -1SOW 9.9 LDH_TOXGO
74 PsiBlast_CBE 73.4145% -32 - C5 -1SOW 10.3 LDH_TOXGO
72 PsiBlast_CBE 73.3945% -33 - C5 -3CZM 10.3 LDH_TOXGO
45 PsiBlast_CBE 72.9156% -18 - C5 -4PLT 10.4 ?
91 PsiBlast_CBE 72.4241% -80 - C5 -4B7U 2.4 ?
112 HHSearch 71.7643% -22 - C5 -4ND2 9.3 ?
17 PsiBlast_PDB 71.3652% -13 - C5 -4PLG 9.7 ?
100 PsiBlast_CBE 71.2741% -80 - C5 -1U5C 8.9 LDH_PLAFD
88 PsiBlast_CBE 70.9741% -85 - C5 -4PLZ 11.3 LDH_PLAFD
90 PsiBlast_CBE 70.7641% -78 - C5 -4B7U 2.4 ?
89 PsiBlast_CBE 70.5941% -83 - C5 -4B7U 2.8 ?
97 PsiBlast_CBE 68.1741% -23 - C5 -1T25 10.5 LDH_PLAFD
118 HHSearch 68.0343% -20 - C5 -1PZG 10.1 ?
98 PsiBlast_CBE 67.8241% -20 - C5 -1T24 11.3 LDH_PLAFD
92 PsiBlast_CBE 67.4141% -22 - C5 -4B7U 2.3 ?
96 PsiBlast_CBE 67.3241% -24 - C5 -1T26 10.3 LDH_PLAFD
94 PsiBlast_CBE 67.2941% -23 - C5 -1T2D 11.3 LDH_PLAFD
126 HHSearch 67.1835% -24 - C5 -4M1Q 3.8 ?
95 PsiBlast_CBE 66.7541% -23 - C5 -1T2C 10.5 LDH_PLAFD
99 PsiBlast_CBE 66.6941% -25 - C5 -2A94 11.2 LDH_PLAFD