@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29570: (2016-07-18 )
MANNNSGNSNNLLVPGAAQAIDQMKLEIASEFGVNLGADTTSRANGSVGGEITKRLVSFAQQNMGGGQF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_1(2Z3X)
SSPC_BACSU
[Raw transfer]

-

NACID_D_1(2Z3X)
SSPC_BACSU
[Raw transfer]

-

NACID_D_1(2Z3X)
SSPC_BACSU
[Raw transfer]

-

NACID_D_1(2Z3X)
SSPC_BACSU
[Raw transfer]

-

NACID_D_1(2Z3X)
SSPC_BACSU
[Raw transfer]

-

1 PsiBlast_PDB 88.8083%-182 - C4 -2Z3X 7.5 SSPC_BACSU
4 HHSearch 88.5781%-182 - C4 -2Z3X 7.5 SSPC_BACSU
3 PsiBlast_CBE 88.4483%-176 - C4 -2Z3X 6.7 SSPC_BACSU
14 Fugue 88.0882%-175 - C4 -2Z3X 7.3 SSPC_BACSU
2 PsiBlast_CBE 85.1983%-157 - C4 -2Z3X 6.8 SSPC_BACSU
23 Fugue 45.7017% 26 - C3 -1EIJ - DNBP_METTH -
9 HHSearch 36.2636%-120 - C4 -4G6V - CDII2_BURP2 -
7 HHSearch 33.858% -44 - C4 -1D8B - -
16 Fugue 33.0346% 47 - C4 -2MLP - ? -
11 HHSearch 32.3046% - - C1 -4XBU - F212A_HUMAN -
6 HHSearch 32.2917% -57 - C4 -1ND9 - IF2_ECOLI -
22 Fugue 31.9014% 87 - C2 -2WGO - ? -
18 Fugue 31.2115% 56 * C3 *1PJZ - TPMT_PSESJ -
8 HHSearch 28.1417% - - C- -1USE - VASP_HUMAN -
17 Fugue 26.6128% 22 - C4 -3C9J - M2_I97A1 -
19 Fugue 23.8427% - - C4 -4RWC - -
12 HHSearch 21.2516% 132 - C4 -1AVO - PSME1_HUMAN -
5 HHSearch 21.0936% 182 - C4 -2MUA - -
20 Fugue 20.7424% 101 * C4 *2KQT - M2_I97A1 -
13 HHSearch 10.8311% - - C5 -4G06 - ? -