@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29670: (2016-07-18 )
MTNLLEDLSFRGLIQQMTDEEGLNKQLNEEKIRLYSGFDPTADSLHIGHLLPILTLRRFQLAGHHPIALVGGATGLIGDPSGKKAERTLNTADIVSEWSQKIKNQLSRFLDFEAAENPAVIANNFDWIGKMNVIDFLRDVGKNFGINYMLAKDTVSSRIESGISYTEFSYMILQSYDFLNLYRDKNCKLQIGGSDQWGNITAGLELIRKSEEEGAKAFGLTIPLVTKADGTKFGKTEGGAIWLDKEKTSPYEFYQFWINTDDRDVVKYLKYFTFLSKEEIEAYAEKTETAPEKREAQKRLAEEVTSLVHGREALEQAINISQALFSGNIKELSAQDVKVGFKDVPSMEVDSTQELSLVDVLVQSKLSPSKRQAREDIQNGAVYINGERQTEINYTLSGEDRIENQFTVLRRGKKKYFLVTYK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_H_8(1VBM)
SYY_ECOLI
[Raw transfer]




YSA_D_4(1VBN)
SYY_ECOLI
[Raw transfer]




YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]




TYA_B_4(3ZXI)
SYYM_HUMAN
[Raw transfer]




TYA_A_3(3ZXI)
SYYM_HUMAN
[Raw transfer]




YSA_B_4(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]




YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]




485_C_3(1JIL)
SYY_STAAE
[Raw transfer]




TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]




AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]




AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]




TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]




TYR_S_3(1TYA)
SYY_GEOSE
[Raw transfer]




TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]




TYR_S_3(1TYD)
SYY_GEOSE
[Raw transfer]




TYR_S_3(1TYB)
SYY_GEOSE
[Raw transfer]




TYR_C_3(4TS1)
SYY_GEOSE
[Raw transfer]




TYR_D_4(4TS1)
SYY_GEOSE
[Raw transfer]




TYR_X_2(4OJM)
SYYM_NEUCR
[Raw transfer]




IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]




TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]




TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]




12 PsiBlast_PDB 78.5247% -20 - C4 -2JAN - SYY_MYCTU -
60 HHSearch 76.9747% 11 - C4 -2JAN - SYY_MYCTU -
7 PsiBlast_PDB 76.0875% -74 - C4 -1TYC - SYY_GEOSE -
8 PsiBlast_PDB 76.0575% -77 - C4 -1TYA 2.8 SYY_GEOSE
10 PsiBlast_PDB 75.7775% -73 - C4 -1TYB 3.0 SYY_GEOSE
9 PsiBlast_PDB 75.4675% -76 - C4 -1TYD 3.4 SYY_GEOSE
11 PsiBlast_PDB 74.8574% -71 - C4 -4TS1 2.7 SYY_GEOSE
2 PsiBlast_PDB 74.4170% -81 - C4 -3TS1 6.7 SYY_GEOSE
1 PsiBlast_PDB 74.3470% -77 - C4 -2TS1 - SYY_GEOSE -
21 PsiBlast_CBE 74.0574% -78 - C4 -4TS1 2.9 SYY_GEOSE
58 HHSearch 71.2870% -2 - C4 -2TS1 - SYY_GEOSE -
13 PsiBlast_PDB 69.9459% -28 - C4 -1X8X 3.2 SYY_ECOLI
6 PsiBlast_PDB 69.8960% 4 - C4 -1JIL - SYY_STAAE -
16 PsiBlast_PDB 69.2758% -32 - C4 -2YXN 2.7 SYY_ECOLI
61 HHSearch 69.1959% -2 - C4 -1JIL 5.4 SYY_STAAE
18 PsiBlast_PDB 69.1458% -29 - C4 -1VBN 7.2 SYY_ECOLI
15 PsiBlast_PDB 69.0958% -29 - C4 -1WQ3 3.3 SYY_ECOLI
17 PsiBlast_PDB 68.9558% -31 - C4 -1WQ4 2.8 SYY_ECOLI
5 PsiBlast_PDB 68.6560% 6 - C4 -1JIK - SYY_STAAE -
23 PsiBlast_CBE 68.3558% -30 - C4 -1VBN 6.4 SYY_ECOLI
14 PsiBlast_PDB 68.1159% -23 - C4 -1VBM 7.2 SYY_ECOLI
22 PsiBlast_CBE 67.6159% -26 - C4 -1VBM 7.5 SYY_ECOLI
65 HHSearch 66.6357% 25 - C4 -2YXN 2.7 SYY_ECOLI
63 HHSearch 60.8836% 24 - C4 -1Y42 3.2 SYYM_NEUCR
25 PsiBlast_CBE 60.6642% 16 - C4 -2PID 7.9 SYYM_HUMAN
19 PsiBlast_PDB 59.6342% 1 - C4 -2PID 7.8 SYYM_HUMAN
24 PsiBlast_CBE 59.2142% 6 - C4 -3ZXI 7.9 SYYM_HUMAN
64 HHSearch 59.1543% 22 - C4 -2PID 7.9 SYYM_HUMAN
20 PsiBlast_PDB 59.1442% 5 - C4 -3ZXI 8.1 SYYM_HUMAN
27 PsiBlast_CBE 57.7835% 18 - C4 -1Y42 3.2 SYYM_NEUCR
26 PsiBlast_CBE 57.7335% 19 - C4 -4OJM 3.4 SYYM_NEUCR