@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29790: (2016-07-18 )
MTVYHFVGIKGTGMSPLAQILHDNGYTVQGSDIEKFIFTQTALEKRNITILPFSAENIKPGMTVIAGNAFPDTHPEIEKAMSEGIPVIRYHKFLGDYMKKFTSVAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGDGTGQGNENSEYFVFEACEYRRHFLSYQPDYAIMTNIDFDHPDYFSSIDDVFDAFQEMALQVNKGIIACGDDEHLPKIHANVPVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLGDQVLIDDYAHHPTEIKVTIEAARQKYPDREIVAVFQPHTFTRTQQFLDEFAESLSGADCVYLCDIFGSARENAGKLTIGDLQGKIHNAKLIEEDDTSVLKAHDKAVLIFMGAGDIQKYMRAYENVMA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_3(1GQY)
MURC_HAEIN
[Raw transfer]




ANP_A_8(1P3D)
MURC_HAEIN
[Raw transfer]




ANP_A_8(1P3D)
MURC_HAEIN
[Raw transfer]




AMP_A_3(4HV4)
MURC_YERPE
[Raw transfer]




AMP_A_3(4HV4)
MURC_YERPE
[Raw transfer]




AMP_B_5(4HV4)
MURC_YERPE
[Raw transfer]




EPU_A_7(1P31)
MURC_HAEIN
[Raw transfer]




39 HHSearch 85.5531% -29 - C2 -4HV4 7.7 MURC_YERPE
37 HHSearch 83.3231% -8 * C2 *1P3D 9.6 MURC_HAEIN
21 PsiBlast_CBE 81.9032% -11 - C2 -4HV4 7.0 MURC_YERPE
2 PsiBlast_PDB 81.4432% 0 - C2 -4HV4 7.8 MURC_YERPE
5 PsiBlast_PDB 81.2930% -30 - C2 -2F00 - MURC_ECOLI -
4 PsiBlast_PDB 80.9730% -24 - C2 -1P3D 9.6 MURC_HAEIN
3 PsiBlast_PDB 80.9130% -23 - C2 -1P31 5.5 MURC_HAEIN
35 HHSearch 80.2631% -20 - C2 -1J6U - MURC_THEMA -
1 PsiBlast_PDB 79.5930% -8 - C2 -1GQY 9.8 MURC_HAEIN
6 PsiBlast_PDB 75.5530% 3 - C2 -1J6U - MURC_THEMA -
36 HHSearch 69.8828% -18 - C- -3HN7 - ? -
51 HHSearch 67.8031% -24 - C2 -3EAG - ? -
8 PsiBlast_PDB 62.8328% 1 - C2 -3EAG - ? -
7 PsiBlast_PDB 62.5927% 15 - C- -3HN7 - ? -
41 HHSearch 59.9719% -0 - C2 -3LK7 - MURD_STRA5 -
49 HHSearch 57.4021% -0 - C2 -4BUB - MURE_THEMA -
44 HHSearch 56.2319% 4 - C2 -3ZM6 - ? -
42 HHSearch 55.6218% -16 - C2 -1GG4 - MURF_ECOLI -
43 HHSearch 54.7718% -20 - C2 -4CVK - ? -
47 HHSearch 54.0720% 15 - C2 -4QDI - ? -