@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu29930: (2016-07-18 )
MVSIRRSFEAYVDDMNIITVLIPAEQKEIMTPPFRLETEITDFPLAVREEYSLEAKYKYVCVSDHPVTFGKIHCVRASSGHKTDLQIGAVIRTAAFDDEFYYDGELGAVYTADHTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDLHGYEYLFCICNNSEWMETVDQYAKAVTVNGEKGVVLRPDQMKWTAPLKPFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKRENSPFEKTVPGYFFRHDECGMPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPGILLFGEGWDLATPLPHEQKAALANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGIAGSSGWKALAPIVPEPSQSINYVESHDNHTFWDKMSFALPQENDSRKRSRQRLAAAIILLAQGVPFIHSGQEFFRTKQGVENSYQSSDSINQLDWDRRETFKEDVHYIRRLISLRKAHPAFRLRSAADIQRHLECLTLKEHLIAYRLYDLDEVDEWKDIIVIHHASPDSVEWRLPNDIPYRLLCDPSGFQEDPTEIKKTVAVNGIGTVILYLASDLKSFA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MLR_A_2(3WDI)
?
[Raw transfer]



MTT_A_3(3WDJ)
?
[Raw transfer]



SUGAR_A_3(2FHF)
PULA_ENTAE
[Raw transfer]
-
MTT_A_2(3WDJ)
?
[Raw transfer]



SUGAR_A_2(2YA1)
?
[Raw transfer]
-
GOL_A_3(2YA0)
?
[Raw transfer]



MLR_A_3(3WDI)
?
[Raw transfer]
2 PsiBlast_PDB 99.4499% -82 - C1 -2E8Z - PULA_BACSU -
38 HHSearch 99.30100% -82 - C1 -2E8Y - PULA_BACSU -
3 PsiBlast_PDB 99.1499% -85 - C1 -2E9B - PULA_BACSU -
21 PsiBlast_CBE 99.1199% -84 * C1 *2E9B - PULA_BACSU -
28 Fugue 99.1099% -82 - C1 -2E8Y - PULA_BACSU -
1 PsiBlast_PDB 99.1099% -82 - C1 -2E8Y - PULA_BACSU -
22 PsiBlast_CBE 98.9499% -81 - C1 -2E8Z - PULA_BACSU -
23 PsiBlast_CBE 97.9499% -81 - C1 -2E8Y - PULA_BACSU -
6 PsiBlast_PDB 73.3747% -1 - C1 -3WDH - ? -
39 HHSearch 72.6448% 14 - C1 -3WDH - ? -
5 PsiBlast_PDB 72.3347% -3 - C1 -3WDI 4.2 ?
4 PsiBlast_PDB 70.6747% -1 - C1 -3WDJ 4.5 ?
45 HHSearch 57.7429% 30 - C1 -2YA0 - ? -
43 HHSearch 55.5330% 21 - C1 -2FHF 4.3 PULA_ENTAE
30 Fugue 53.5227% 3 - C1 -3FAW - ? -
40 HHSearch 53.4827% 25 - C1 -3FAW - ? -
17 PsiBlast_PDB 51.9930% 6 - C1 -4J3W - ? -
15 PsiBlast_PDB 51.5130% 4 - C1 -4J3U - ? -
46 HHSearch 51.4326% 3 - C1 -1BF2 - ISOA_PSEAY -
47 HHSearch 51.2726% 11 - C1 -4J7R - ? -