@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu30210: (2016-07-19 )
MKIDSWLNDRLDIAKEAGVHRNLRSMNGAPVPERNIDGENQTVWSSNNYLGLASDRRLIDAAQTALQQFGTGSSGSRLTTGNSVWHEKLEKKIASFKRTEAALLFSSGYLANVGVLSSLPEKEDVILSDQLNHASIIDGCRLSKADTVVYRHIDMNDLENKLNETQRYQRRFIVTDGVFSMDGTIVPLDQIISLAKRYHAFVVVDDAHATGVLGDSGRGTSEYFGVYPDIVIGTLSKAVGTEGGFAAGSAVFIDFLLNHARTFIFQTAIPPASCAAAHEAFNIRTSLKNMGYVVKGDHTPIIPVVIGDAHKTVIFAEKLQGKGIYAPAIRPPTVAPGESRIRITITSDHSMGDIDDLLKTFHSIGKELHII

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLS_A_2(2W8J)
?
[Raw transfer]




KAM_A_5(1DJ9)
BIOF_ECOLI
[Raw transfer]




PLS_A_2(2W8W)
?
[Raw transfer]




PMP_A_2(2XBN)
?
[Raw transfer]




PLP_A_5(1DJE)
BIOF_ECOLI
[Raw transfer]




PLP_A_3(3TQX)
?
[Raw transfer]




PLP_A_3(3A2B)
?
[Raw transfer]




LLF_A_3(2G6W)
BIOF_ECOLI
[Raw transfer]




MYB_A_4(4BMK)
?
[Raw transfer]




MYB_B_8(4BMK)
?
[Raw transfer]




AKB_A_3(1FC4)
KBL_ECOLI
[Raw transfer]




8 PsiBlast_PDB 85.3535% -76 - C1 -1DJE 4.8 BIOF_ECOLI
7 PsiBlast_PDB 84.9835% -72 - C1 -1DJ9 4.4 BIOF_ECOLI
5 PsiBlast_PDB 84.6035% -67 - C1 -1BS0 - BIOF_ECOLI -
1 PsiBlast_PDB 84.4536% -40 - C1 -3A2B 3.3 ?
47 Fugue 84.3234% -61 - C1 -1BS0 - BIOF_ECOLI -
6 PsiBlast_PDB 83.1835% -67 - C1 -2G6W 3.3 BIOF_ECOLI
4 PsiBlast_PDB 82.8832% -61 - C1 -2X8U - ? -
17 PsiBlast_PDB 82.5131% -72 - C1 -4BMK 3.8 ?
10 PsiBlast_PDB 82.1032% -65 - C1 -2W8J 5.1 ?
63 HHSearch 81.9035% -60 - C1 -3WY7 - BIOF_MYCS2 -
11 PsiBlast_PDB 81.6732% -65 - C1 -2XBN 4.0 ?
16 PsiBlast_PDB 81.2632% -65 - C1 -2W8V - ? -
14 PsiBlast_PDB 81.1532% -66 - C1 -2W8W 4.3 ?
65 HHSearch 80.8130% -65 - C- -4IW7 - ? -
15 PsiBlast_PDB 80.6832% -67 - C- -2W8U - ? -
62 HHSearch 79.5038% -1 - C1 -1FC4 - KBL_ECOLI -
21 PsiBlast_CBE 79.2331% -74 - C1 -4BMK 3.0 ?
12 PsiBlast_PDB 79.0832% -64 - C- -2JG2 - ? -
13 PsiBlast_PDB 78.7032% -65 - C- -2W8T - ? -
57 HHSearch 78.5039% 6 - C1 -3TQX - ? -
3 PsiBlast_PDB 78.0236% -7 - C1 -1FC4 5.2 KBL_ECOLI
2 PsiBlast_PDB 74.4537% -3 - C1 -3TQX 3.9 ?