@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu30220: (2016-07-19 )
MKIDSWLNERLDRMKEAGVHRNLRSMDGAPVPERNIDGENQTVWSSNNYLGLASDRRLIDAAQTALQQFGTGSSGSRLTTGNSVWHEKLEKKIASFKLTEAALLFSSGYLANVGVLSSLPEKEDVILSDQLNHASMIDGCRLSKADTVVYRHIDMNDLENKLNETQRYQRRFIVTDGVFSMDGTIAPLDQIISLAKRYHAFVVVDDAHATGVLGDSGQGTSEYFGVCPDIVIGTLSKAVGAEGGFAAGSAVFIDFLLNHARTFIFQTAIPPASCAAAHEAFNIIEASREKRQLLFSYISMIRTSLKNMGYVVKGDHTPIIPVVIGDAHKTVLFAEKLQGKGIYAPAIRPPTVAPGESRIRITITSDHSMGDIDHLLQTFHSIGKELHII

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLS_A_2(2W8J)
?
[Raw transfer]




KAM_A_5(1DJ9)
BIOF_ECOLI
[Raw transfer]




PLS_A_2(2W8W)
?
[Raw transfer]




PMP_A_2(2XBN)
?
[Raw transfer]




PLP_A_3(3TQX)
?
[Raw transfer]




PLP_A_5(1DJE)
BIOF_ECOLI
[Raw transfer]




PLP_A_3(3A2B)
?
[Raw transfer]




PLP_A_3(3A2B)
?
[Raw transfer]




LLF_A_3(2G6W)
BIOF_ECOLI
[Raw transfer]




MYB_A_4(4BMK)
?
[Raw transfer]




MYB_B_8(4BMK)
?
[Raw transfer]




59 Fugue 87.8834% -60 - C1 -1BS0 - BIOF_ECOLI -
7 PsiBlast_PDB 87.4536% -70 - C1 -1DJE 4.8 BIOF_ECOLI
4 PsiBlast_PDB 87.3636% -65 - C1 -1BS0 - BIOF_ECOLI -
6 PsiBlast_PDB 85.6736% -65 - C1 -1DJ9 4.4 BIOF_ECOLI
1 PsiBlast_PDB 85.1036% -42 - C1 -3A2B 3.3 ?
5 PsiBlast_PDB 84.0636% -64 - C1 -2G6W 3.3 BIOF_ECOLI
2 PsiBlast_PDB 83.2437% -23 - C1 -3TQX 3.8 ?
45 HHSearch 82.1535% -60 - C1 -3WY7 - BIOF_MYCS2 -
43 HHSearch 81.4838% 8 - C1 -1FC4 - KBL_ECOLI -
44 HHSearch 81.4028% -71 - C- -4IW7 - ? -
3 PsiBlast_PDB 80.7837% -1 - C1 -1FC4 - KBL_ECOLI -
8 PsiBlast_PDB 79.1433% -18 - C1 -2X8U - ? -
38 HHSearch 78.6938% 12 - C1 -3TQX - ? -
39 HHSearch 78.4631% -65 - C- -2W8T - ? -
60 Fugue 76.1932% -4 - C1 -2BWN - HEM1_RHOCB -
18 PsiBlast_PDB 76.1036% -66 - C1 -3WY7 - BIOF_MYCS2 -
42 HHSearch 75.7035% -7 * C1 *1BS0 - BIOF_ECOLI -
29 PsiBlast_CBE 75.6632% -4 - C1 -2BWN - HEM1_RHOCB -
30 PsiBlast_CBE 75.4832% -2 - C1 -2BWN - HEM1_RHOCB -
17 PsiBlast_PDB 75.3331% -0 - C1 -4BMK 3.8 ?
10 PsiBlast_PDB 74.9931% 4 - C1 -2W8J 5.1 ?
14 PsiBlast_PDB 74.8431% 0 - C1 -2W8W 4.3 ?
11 PsiBlast_PDB 74.5531% 2 - C1 -2XBN 4.0 ?
41 HHSearch 72.9737% 19 - C1 -3A2B 3.3 ?
21 PsiBlast_CBE 71.6531% 1 - C1 -4BMK 2.2 ?