@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu30270: (2016-07-19 )
MKHTFVLFLSLILLVLPGCSAEKSSADTAKKTLTIYSTMSTDSERDTFRKLAAAFEKEHSDIHVSLHFPGNDYENMMRVRMAANDLPDLFDTHGWGKIRYGEYTADLRDMKWTQDLDPNLNSILKNKSGKVYAYPINQAKDGLAYNRNILDRYGIAPPETMDDFIKALRTIKEKSKGSIVPFWFAGYDKSSFAQYYDQFATPLLITDPAHNEKKQLINGTFQWSKFTYLSEILKQMQKEKLINIDAVTAKKSQLIELMAQNKIAFTMQGGTLGQDVAQINPNVKVGIIPTPAIHPGDDPIWIGGERYTLAAWKDSPQLKEAKDFIAFMARPANAKQMAEATSLPSGLTNVKADIFYANDYEYYQDVKVEPYFDRLYLPNGMWDVLGTVGQELAADILAPQDISQKLGREYKRLREQSETQGAENNE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_3(4RK9)
?
[Raw transfer]

-

SUGAR_B_4(4RK9)
?
[Raw transfer]

-

SUGAR_A_3(4RK9)
?
[Raw transfer]

-

23 Fugue 100.00100% -83 - C2 -4R6H - MSME_BACSU -
1 PsiBlast_PDB 99.7999% -83 - C2 -4R6H - MSME_BACSU -
21 PsiBlast_CBE 84.1358% -69 - C2 -4RK9 5.0 ?
2 PsiBlast_PDB 83.4458% -72 - C2 -4RK9 5.1 ?
38 HHSearch 78.9988% 3 - C2 -4R6H - MSME_BACSU -
34 HHSearch 63.8452% 17 - C2 -4RK9 2.4 ?
52 HHSearch 45.5514% 19 - C2 -3OO8 - ? -
41 HHSearch 45.4720% 50 - C2 -3K01 - ? -
46 HHSearch 45.0216% 20 - C2 -3I3V - ? -
39 HHSearch 44.6715% 2 - C2 -3UOR - ? -
45 HHSearch 44.0216% 13 - C2 -5CI5 - ? -
7 PsiBlast_PDB 42.5421% 20 - C2 -2HFB - ? -
3 PsiBlast_PDB 42.3922% 26 - C2 -4G68 - ? -
36 HHSearch 42.3219% 32 * C2 *4G68 - ? -
49 HHSearch 42.2114% 13 - C2 -2UVJ - ? -
43 HHSearch 41.7916% 49 - C2 -3QUF - ? -
51 HHSearch 41.6215% 20 - C2 -4RJZ - ? -
24 Fugue 41.4616% 19 - C2 -3I3V - ? -
47 HHSearch 40.7016% 26 - C2 -4R6K - YESO_BACSU -
6 PsiBlast_PDB 40.6822% 29 - C2 -2HEU - ? -