@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu30560: (2016-07-20 )
MNSVDLTADLQALLTCPNVRHNLSAAQLTEKVLSRNEGILTSTGAVRATTGAYTGRSPKDKFIVEEESTKNKIDWGPVNQPISEEAFERLYTKVVSYLKERDELFVFEGFAGADEKYRLPITVVNEFAWHNLFARQLFIRPEGNDKKTVEQPFTILSAPHFKADPKTDGTHSETFIIVSFEKRTILIGGTEYAGEMKKSIFSIMNFLLPERDILSMHCSANVGEKGDVALFFGLSGTGKTTLSADADRKLIGDDEHGWSDTGVFNIEGGCYAKCIHLSEEKEPQIFNAIRFGSVLENVVVDEDTREANYDDSFYTENTRAAYPIHMINNIVTPSMAGHPSAIVFLTADAFGVLPPISKLTKEQAMYHFLSGYTSKLAGTERGVTSPETTFSTCFGSPFLPLPAHVYAEMLGKKIDEHGADVFLVNTGWTGGGYGTGERMKLSYTRAMVKAAIEGKLEDAEMITDDIFGLHIPAHVPGVPDHILQPENTWTNKEEYKEKAVYLANEFKENFKKFAHTDAIAQAGGPLV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(1K3D)
PCKA_ECOLI
[Raw transfer]



ATP_A_4(1AQ2)
PCKA_ECOLI
[Raw transfer]



ATP_A_6(2OLR)
PCKA_ECOLI
[Raw transfer]



ATP_X_5(2PXZ)
PCKA_ECOLI
[Raw transfer]



ATP_A_4(1AYL)
PCKA_ECOLI
[Raw transfer]



ATP_A_4(1OS1)
PCKA_ECOLI
[Raw transfer]



ADP_A_3(1K3C)
PCKA_ECOLI
[Raw transfer]



ATP_X_5(2PY7)
PCKA_ECOLI
[Raw transfer]
20 PsiBlast_CBE 82.1855% 19 - C3 -2PC9 - PCKA_THET8 -
21 PsiBlast_CBE 82.0155% 19 - C3 -2PC9 - PCKA_THET8 -
2 PsiBlast_PDB 81.3355% 27 - C3 -2PC9 - PCKA_THET8 -
1 PsiBlast_PDB 81.2255% 25 - C3 -1XKV - PCKA_THET8 -
25 HHSearch 76.7244% -1 - C3 -1II2 - PCKA_TRYCR -
46 Fugue 76.5444% -1 * C3 *1II2 - PCKA_TRYCR -
11 PsiBlast_PDB 75.8749% 30 - C3 -2PY7 8.5 PCKA_ECOLI
17 PsiBlast_PDB 75.4044% 0 - C3 -1II2 - PCKA_TRYCR -
23 PsiBlast_CBE 75.0244% 4 - C3 -1II2 - PCKA_TRYCR -
13 PsiBlast_PDB 74.6250% 32 - C3 -1YLH - PCKA_ACTSZ -
26 HHSearch 74.6149% 37 - C3 -2OLR - PCKA_ECOLI -
7 PsiBlast_PDB 73.9349% 31 - C3 -2OLR 8.9 PCKA_ECOLI
6 PsiBlast_PDB 73.5449% 35 - C3 -2OLQ - PCKA_ECOLI -
12 PsiBlast_PDB 73.5150% 33 - C3 -1YGG - PCKA_ACTSZ -
10 PsiBlast_PDB 73.3249% 31 - C3 -1AYL 6.9 PCKA_ECOLI
8 PsiBlast_PDB 73.3249% 33 - C3 -1AQ2 7.8 PCKA_ECOLI
3 PsiBlast_PDB 73.3149% 33 - C3 -1K3C 7.2 PCKA_ECOLI
27 HHSearch 72.8846% 42 - C3 -1YTM - PCKA_ANASU -
5 PsiBlast_PDB 72.8849% 32 - C3 -1OS1 7.4 PCKA_ECOLI
9 PsiBlast_PDB 72.6649% 31 - C3 -2PXZ 9.5 PCKA_ECOLI
4 PsiBlast_PDB 72.4049% 32 - C3 -1K3D 6.5 PCKA_ECOLI