@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu30820: (2016-07-21 )
MTVNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVREVKKQWEL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TPP_A_3(2JLC)
MEND_ECOLI
[Raw transfer]




AKG_A_3(3HWW)
MEND_ECOLI
[Raw transfer]




1 PsiBlast_PDB 93.77100% -97 - C8 -2X7J - MEND_BACSU -
21 PsiBlast_CBE 93.07100% -95 - C8 -2X7J - MEND_BACSU -
23 PsiBlast_CBE 93.02100% -96 - C8 -2X7J - MEND_BACSU -
22 PsiBlast_CBE 92.41100% -96 - C8 -2X7J - MEND_BACSU -
61 HHSearch 81.6995% -26 - C8 -2X7J - MEND_BACSU -
66 HHSearch 65.5348% -35 - C8 -3LQ1 - MEND_LISMF -
2 PsiBlast_PDB 64.6849% -36 - C8 -3LQ1 - MEND_LISMF -
51 Fugue 56.9329% -16 * C8 *2JLC - MEND_ECOLI -
7 PsiBlast_PDB 55.6229% -22 - C8 -2JLA - MEND_ECOLI -
67 HHSearch 55.1029% -33 - C8 -3HWW - MEND_ECOLI -
5 PsiBlast_PDB 53.7129% -24 - C8 -3HWW 3.5 MEND_ECOLI
3 PsiBlast_PDB 53.5029% -21 - C8 -2JLC 7.2 MEND_ECOLI
4 PsiBlast_PDB 53.0029% -23 - C8 -3FLM - MEND_ECOLI -
73 HHSearch 49.4418% -44 - C8 -2UZ1 - ? -
65 HHSearch 46.8615% -26 - C8 -4RJJ - ? -
11 PsiBlast_PDB 46.2721% -23 - C8 -4MQ5 - MDLC_PSEPU -
64 HHSearch 46.1716% -26 - C8 -2PAN - GCL_ECOLI -
70 HHSearch 45.9314% -9 - C8 -2WVG - PDC_ZYMMO -
63 HHSearch 45.5617% -25 - C8 -2IHT - CEAS_STRCL -
76 HHSearch 45.2618% -21 - C8 -4Q9D - ? -