@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31370: (2016-07-22 )
MQNFTYWNPTKLIFGRGEVERLPEELKPYGKNVLLVYGGGSIKRSGLYDQVIEQLNKAGATVHELAGVEPNPRVSTVNKGVAICKEQNIDFLLAVGGGSVIDCTKAIAAGAKYDGDAWDIVTKKHQPKDALPFGTVLTLAATGSEMNSGSVITNWETKEKYGWGSPLVFPKFSILDPVNTFTVPKNHTIYGMVDMMSHVFEQYFHHVSNTPYQDRMCESLLRTVIETAPKLINDLENYELRETILYTGTIALNGMLSMGARGDWATHNIEHAVSAVYDIPHAGGLAILFPNWMRHTLSENPARMKQLAVRVFDVEEAGKTDEEIALEGIDKLSAFWTSLGAPNRLADYDINDEQLDTIADKAMANGTFGQFKSLNKEDVLSILKASL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_6(1VLJ)
?
[Raw transfer]




NAP_A_5(1VLJ)
?
[Raw transfer]




NAP_A_5(1VLJ)
?
[Raw transfer]




23 PsiBlast_CBE 87.7939% -70 - C3 -1OJ7 - YQHD_ECOLI -
1 PsiBlast_PDB 85.8644% -13 - C3 -1VLJ 11.6 ?
21 PsiBlast_CBE 85.8444% -12 - C3 -1VLJ 10.5 ?
24 PsiBlast_CBE 85.7439% -60 - C3 -1OJ7 - YQHD_ECOLI -
29 HHSearch 85.7345% -21 - C3 -1VLJ 11.6 ?
2 PsiBlast_PDB 85.2839% -63 - C3 -1OJ7 - YQHD_ECOLI -
22 PsiBlast_CBE 85.2139% -61 - C3 -1OJ7 - YQHD_ECOLI -
4 PsiBlast_PDB 82.3128% -83 - C3 -3OWO - ADH2_ZYMMO -
5 PsiBlast_PDB 80.3928% -79 - C3 -3OX4 - ADH2_ZYMMO -
49 Fugue 71.4836% 27 - C3 -1OJ7 - YQHD_ECOLI -
28 HHSearch 71.0427% -20 - C3 -3BFJ - DHAT_KLEPN -
26 HHSearch 70.7426% -16 - C3 -3OX4 - ADH2_ZYMMO -
10 PsiBlast_PDB 69.9326% -91 - C3 -1O2D - ? -
11 PsiBlast_PDB 68.8626% -90 - C3 -1VHD - ? -
32 HHSearch 68.8426% -38 - C3 -1O2D - ? -
40 HHSearch 68.7521% -87 - C3 -4MCA - ? -
3 PsiBlast_PDB 68.2027% 1 - C3 -3BFJ - DHAT_KLEPN -
8 PsiBlast_PDB 66.3524% -39 - C3 -2BI4 - FUCO_ECOLI -
25 HHSearch 66.0824% -26 - C3 -5BR4 - FUCO_ECOLI -
9 PsiBlast_PDB 64.7024% -36 - C3 -2BL4 - FUCO_ECOLI -