@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31440: (2016-07-22 )
MNFDKREERLGTQSVKWDKTGELFGVTDALPMWVADMDFRAPEAITEALKERLDHGIFGYTTPDQKTKDAVCGWMQNRHGWKVNPESITFSPGVVTALSMAVQAFTEPGDQVVVQPPVYTPFYHMVEKNGRHILHNPLLEKDGAYAIDFEDLETKLSDPSVTLFILCNPHNPSGRSWSREDLLKLGELCLEHGVTVVSDEIHSDLMLYGHKHTPFASLSDDFADISVTCAAPSKTFNIAGLQASAIIIPDRLKRAKFSASLQRNGLGGLNAFAVTAIEAAYSKGGPWLDELITYIEKNMNEAEAFLSTELPKVKMMKPDASYLIWLDFSAYGLSDAELQQRMLKKGKVILEPGTKYGPGGEGFMRLNAGCSLATLQDGLRRIKAALS

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_3(4DGT)
?
[Raw transfer]



PLP_B_10(4DGT)
?
[Raw transfer]



PLP_A_3(3L8A)
?
[Raw transfer]



PLP_A_3(3L8A)
?
[Raw transfer]



PLP_A_3(4DQ6)
?
[Raw transfer]



PLP_A_3(4DQ6)
?
[Raw transfer]



PLP_B_4(3L8A)
?
[Raw transfer]



PLP_B_6(4DQ6)
?
[Raw transfer]



PEG_B_13(3DZZ)
?
[Raw transfer]



PEG_B_13(3DZZ)
?
[Raw transfer]



EDO_A_14(3FDB)
?
[Raw transfer]
3 PsiBlast_PDB 96.6545%-128 - C- -3T32 - ? -
50 HHSearch 89.4746% -83 - C- -3T32 - ? -
22 PsiBlast_CBE 87.0143% -30 - C1 -4DGT 3.9 ?
10 PsiBlast_PDB 85.3836%-110 - C1 -3DZZ 2.8 ?
1 PsiBlast_PDB 84.7943% -28 - C1 -4DGT 4.0 ?
7 PsiBlast_PDB 84.6939% -91 - C1 -3L8A 3.2 ?
21 PsiBlast_CBE 84.3543% -28 - C1 -4DQ6 3.9 ?
2 PsiBlast_PDB 83.8543% -27 - C1 -4DQ6 3.8 ?
32 PsiBlast_CBE 83.3739% -93 - C1 -3L8A 4.0 ?
56 HHSearch 80.8143% -7 - C1 -4DQ6 3.8 ?
48 HHSearch 75.2539% -6 - C1 -3B1D - ? -
6 PsiBlast_PDB 74.4739% 14 - C1 -3B1E - ? -
27 PsiBlast_CBE 74.1839% 13 - C1 -3B1D - ? -
12 PsiBlast_PDB 74.0830% -93 - C1 -3FDB 2.8 ?
24 PsiBlast_CBE 73.8239% 15 - C1 -3B1E - ? -
26 PsiBlast_CBE 73.7739% 15 - C1 -3B1D - ? -
4 PsiBlast_PDB 73.5239% 14 - C1 -3B1C - ? -
28 PsiBlast_CBE 73.4239% 15 - C1 -3B1D - ? -
23 PsiBlast_CBE 73.4139% 12 - C1 -3B1E - ? -
55 HHSearch 73.1437% -8 - C1 -3DZZ 3.0 ?
52 HHSearch 72.9439% 0 - C1 -3L8A 3.2 ?